Gene Card
Gene overview
cDNA / CDS / Protein Sequences
585 bp · LXL04_010715|LXL04_010715|OH1004|cDNA
ATGATCGGAGTAGGGAAGATTAAGCAGTACACTAATGTTCTGGATAAACCCCTTAGTAAAGGCAGACAAGAGGTGAGTTTAAGTGGATTTGCTTACTTATTTTCAGAGCTTGTTCAGTACAACCAAACTCAGGTTGACAACATTGGGGAACTAGAAAGGAGATTGGAAGATGCTGGTTATGCTGTTGGAGTACGAGTTTTGGAATTACTTTGCCATAGGGAAAAGGGTAATAGAAGAGAGACACGGTTGTTGGGCATTTT...
585 bp · LXL04_010715|LXL04_010715|OH1004|CDS
ATGATCGGAGTAGGGAAGATTAAGCAGTACACTAATGTTCTGGATAAACCCCTTAGTAAAGGCAGACAAGAGGTGAGTTTAAGTGGATTTGCTTACTTATTTTCAGAGCTTGTTCAGTACAACCAAACTCAGGTTGACAACATTGGGGAACTAGAAAGGAGATTGGAAGATGCTGGTTATGCTGTTGGAGTACGAGTTTTGGAATTACTTTGCCATAGGGAAAAGGGTAATAGAAGAGAGACACGGTTGTTGGGCATTTT...
Protein
Download Protein FASTA194 aa · LXL04_010715|LXL04_010715|OH1004|PROTEIN
MIGVGKIKQYTNVLDKPLSKGRQEVSLSGFAYLFSELVQYNQTQVDNIGELERRLEDAGYAVGVRVLELLCHREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISVPKDMGSFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPVDGQQRPRTTILIKFAEEVLRREARLG
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_010715 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_010715 |
|---|---|
| Location | Chr02:152017217-152019298 (-) |
| Description | Similar to trappc5: Trafficking protein particle complex subunit 5 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006886 intracellular protein transport Biological Process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0006891 intra-Golgi vesicle-mediated transport Biological Process GO:0006901 vesicle coating Biological Process GO:0016236 macroautophagy Biological Process GO:0048208 COPII vesicle coating Biological Process GO:0099022 vesicle tethering Biological Process GO:0005634 nucleus Cellular Component GO:0005635 nuclear envelope Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005829 cytosol Cellular Component |
| KEGG gene cross-reference | bta:504874 ddi:DDB_G0278643 hsa:126003 mmu:66682 spo:2540014 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04051.22TRAPP30-182 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_010715 | PF04051.22 | TRAPP | 30 | 182 | 1.8e-47 | 161.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.