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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_010595
Reference: OH-1004 Chr: Chr02 Coordinates: 149457448-149460102 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2655 bp · LXL04_010595|LXL04_010595|OH1004|cDNA

ATGTCTGCTACTGTGAGTGGTCGATCTCGAAGCATTTTCAGTAAGGTGTGTAACTCTCTAATATCTAATACTGCCTTCTCTCTACTCCCAAAACCCCCAATTTTTCAATGCTCACACTGCTTCAATAATTCATCATCTTCCAATCGTAAATGTGATTATCTTGAGGATTTCTCACCTTTTAAGGATTCAAATAGTGAAGATGCTATTATAAACCCGACCGAGAGGCGTAGAATCATATTGGGGCTAGGGAAGCTGGTAAA...

CDS

Download CDS FASTA

2655 bp · LXL04_010595|LXL04_010595|OH1004|CDS

ATGTCTGCTACTGTGAGTGGTCGATCTCGAAGCATTTTCAGTAAGGTGTGTAACTCTCTAATATCTAATACTGCCTTCTCTCTACTCCCAAAACCCCCAATTTTTCAATGCTCACACTGCTTCAATAATTCATCATCTTCCAATCGTAAATGTGATTATCTTGAGGATTTCTCACCTTTTAAGGATTCAAATAGTGAAGATGCTATTATAAACCCGACCGAGAGGCGTAGAATCATATTGGGGCTAGGGAAGCTGGTAAA...

Protein

Download Protein FASTA

884 aa · LXL04_010595|LXL04_010595|OH1004|PROTEIN

MSATVSGRSRSIFSKVCNSLISNTAFSLLPKPPIFQCSHCFNNSSSSNRKCDYLEDFSPFKDSNSEDAIINPTERRRIILGLGKLVKTNKSSILKDFSSGFCPFLLAKIMGLFGNRQGAFAFFKFMFREESDMIINSCCVTCHVLAMEGFRIIAQDVLSLILSRIGRSKGQQFMEFMWRGHFGYESDFSVLDSLMRAFIKVEMESQALQISRTMRGLGLQPCLSALSTLFRLLLRIGDYGSVWKLFRDSIKNGPYPSNIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_010595
TK1151 IDTkA03G536500
OH-1004 IDLXL04_010595
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)64.400
Protein coverage (%)TK1151 87.879 / OH-1004 61.878
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_010595
LocationChr02:149457448-149460102 (-)
DescriptionSimilar to At5g01110: Pentatricopeptide repeat-containing protein At5g01110
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g01110 Pentatricopeptide repeat-containing protein At5g01110. No verified direct reference in this release
At1g05670 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial. No verified direct reference in this release
At3g22470 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial. No verified direct reference in this release
At1g62910 Pentatricopeptide repeat-containing protein At1g62910. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q76C99 Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010595 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G05670
ath:AT5G01110
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.774
Rank 1 · LXL04_010595 · OH-1004
Plastid0.122
Rank 2 · LXL04_010595 · OH-1004
Nucleus0.058
Rank 3 · LXL04_010595 · OH-1004
Cytoplasm0.031
Rank 4 · LXL04_010595 · OH-1004
Cell membrane0.011
Rank 5 · LXL04_010595 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2225-270 aa
PF12854.14PPR_1253-284 aa
PF13041.13PPR_2256-304 aa
PF01535.27PPR259-289 aa
PF13812.13PPR_3280-338 aa
PF23276.3TPR_24282-389 aa
PF12854.14PPR_1289-319 aa
PF01535.27PPR294-324 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_010595PF13041.13PPR_22252703.1e-142463.3
LXL04_010595PF12854.14PPR_12532843.8e-93305.6
LXL04_010595PF13041.13PPR_22563043.1e-142463.3
LXL04_010595PF01535.27PPR2592891.9e-87282.3
LXL04_010595PF13812.13PPR_32803386.4e-54180.6
LXL04_010595PF23276.3TPR_242823891.6e-36125.9
LXL04_010595PF12854.14PPR_12893193.8e-93305.6
LXL04_010595PF01535.27PPR2943241.9e-87282.3
LXL04_010595PF13041.13PPR_22953403.1e-142463.3
LXL04_010595PF17177.11PPR_long3114283.7e-30105.6
LXL04_010595PF12854.14PPR_13223553.8e-93305.6
LXL04_010595PF29070.1MSC6_N3234049e-2898.1
LXL04_010595PF13041.13PPR_23303633.1e-142463.3
LXL04_010595PF01535.27PPR3303591.9e-87282.3
LXL04_010595PF13812.13PPR_33504056.4e-54180.6
LXL04_010595PF12854.14PPR_13573903.8e-93305.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LFC5Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g0111026.557%Swiss-Protweak database homology
Q0WVK7Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g05670, mitochondrial26.006%Swiss-Protweak database homology
Q6NQ83Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g22470, mitochondrial27.154%Swiss-Protweak database homology
Q9LQ16Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g6291028.748%Swiss-Protweak database homology
Q76C99Oryza sativa subsp. indicaProtein Rf1, mitochondrial27.787%Swiss-Protweak database homology

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