LXL04_010570 | RubberDandelionOmics

Gene overview

LXL04_010570

Reference: OH-1004 Chr: Chr02 Coordinates: 149217858-149226625 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5154 bp · LXL04_010570|LXL04_010570|OH1004|cDNA

ATGGCCGGAGGTGCTGCAGGAGGTTTTGTTACTCGAGCATTGGAATCCATGCTCAAAGAGTGTTCTGGGAAGAAGTATACCTCTCTTCAGACTGCAATCCAATCTTATCTAGTTCCACTTGCATTTTCAGAAAATTCCAAAGAGATCAATAAAGAGGTGAAATCAAGTGATGCCAACAAAGTTACATCTTCAGAAGGAGGAGATACAAGTGTGCCTGAAACCAACAACGATGGAACTGCAAGAACTGAAGAGGAGGCTGA...

CDS

Download CDS FASTA

5154 bp · LXL04_010570|LXL04_010570|OH1004|CDS

ATGGCCGGAGGTGCTGCAGGAGGTTTTGTTACTCGAGCATTGGAATCCATGCTCAAAGAGTGTTCTGGGAAGAAGTATACCTCTCTTCAGACTGCAATCCAATCTTATCTAGTTCCACTTGCATTTTCAGAAAATTCCAAAGAGATCAATAAAGAGGTGAAATCAAGTGATGCCAACAAAGTTACATCTTCAGAAGGAGGAGATACAAGTGTGCCTGAAACCAACAACGATGGAACTGCAAGAACTGAAGAGGAGGCTGA...

Protein

Download Protein FASTA

1717 aa · LXL04_010570|LXL04_010570|OH1004|PROTEIN

MAGGAAGGFVTRALESMLKECSGKKYTSLQTAIQSYLVPLAFSENSKEINKEVKSSDANKVTSSEGGDTSVPETNNDGTARTEEEADVAPSASHDAEVAETVSAPVVSSGSVKTTLASAGHSLEGAESELVLSPLRLAFETKNPKVLELALDCLHKLIAYDHLEGDPGLENGKNGPLFTEILTMVCSCVDNSSPDSTTLQVLKVLLTAVASAKFRVHGEALLGVIRVCYNIALNSKSPINQATSKAMLTQMINIVFRRME...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010570`
TK1151 ID	TkA03G535840
OH-1004 ID	LXL04_010570
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_010570

Location Chr02:149217858-149226625 (+)

Description Similar to BIG5: Brefeldin A-inhibited guanine nucleotide-exchange protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g43300`	Activates the ARF proteins by exchanging bound GDP for free GTP.	Effector-triggered immunity blocks pathogen degradation of an immunity-associated vesicle traffic regulator in Arabidopsis.2011 · DOI: 10.1073/pnas.1103338108
`At1g01960`	Activates the ARF proteins by exchanging bound GDP for free GTP.	No verified direct reference in this release
`At4g38200`	Activates the ARF proteins by exchanging bound GDP for free GTP.	No verified direct reference in this release
`At3g60860`	Activates the ARF proteins by exchanging bound GDP for free GTP.	No verified direct reference in this release
`At4g35380`	Activates the ARF proteins by exchanging bound GDP for free GTP.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010570 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0006897 endocytosis Biological Process

GO:0006955 immune response Biological Process

GO:0009561 megagametogenesis Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0015031 protein transport Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0031338 regulation of vesicle fusion Biological Process

GO:0032012 regulation of ARF protein signal transduction Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0043001 Golgi to plasma membrane protein transport Biological Process

GO:0045087 innate immune response Biological Process

KEGG gene cross-reference

ath:AT1G01960

ath:AT3G43300

ath:AT3G60860

ath:AT4G38200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.412

Rank 1 · LXL04_010570 · OH-1004

Golgi apparatus0.389

Rank 2 · LXL04_010570 · OH-1004

Cell membrane0.222

Rank 3 · LXL04_010570 · OH-1004

Nucleus0.139

Rank 4 · LXL04_010570 · OH-1004

Endoplasmic reticulum0.125

Rank 5 · LXL04_010570 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16213.12DCB127-262 aa

PF12783.14Sec7-like_HUS336-487 aa

PF01369.26Sec7579-760 aa

PF09324.16Sec7-like_HDS1068-1150 aa

PF16206.10Mon2_C1225-1288 aa

PF23325.2TPR_281227-1321 aa

PF20252.4BIG2_C1523-1709 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010570	`PF16213.12`	DCB	127	262	1.3e-29	103.9
LXL04_010570	`PF12783.14`	Sec7-like_HUS	336	487	3.3e-39	135.0
LXL04_010570	`PF01369.26`	Sec7	579	760	3.6e-71	239.3
LXL04_010570	`PF09324.16`	Sec7-like_HDS	1068	1150	7.8e-31	106.5
LXL04_010570	`PF16206.10`	Mon2_C	1225	1288	5.2e-06	25.6
LXL04_010570	`PF23325.2`	TPR_28	1227	1321	1.4e-08	35.6
LXL04_010570	`PF20252.4`	BIG2_C	1523	1709	1.4e-23	84.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IXW2`	Arabidopsis thaliana	Brefeldin A-inhibited guanine nucleotide-exchange protein 5	69.910%	Swiss-Prot	strong database homology
`Q9LPC5`	Arabidopsis thaliana	Brefeldin A-inhibited guanine nucleotide-exchange protein 3	37.697%	Swiss-Prot	moderate database homology
`F4JSZ5`	Arabidopsis thaliana	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	36.975%	Swiss-Prot	moderate database homology
`Q9LZX8`	Arabidopsis thaliana	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	38.807%	Swiss-Prot	moderate database homology
`F4JN05`	Arabidopsis thaliana	Brefeldin A-inhibited guanine nucleotide-exchange protein 4	35.714%	Swiss-Prot	moderate database homology

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