LXL04_010512 | RubberDandelionOmics

Gene overview

LXL04_010512

Reference: OH-1004 Chr: Chr02 Coordinates: 148132480-148140039 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1800 bp · LXL04_010512|LXL04_010512|OH1004|cDNA

ATGGGGTTTGATGAATTGGGAGGGGTGAGTTATTATGTGGGAATTTTGGTGGGATTCATGTTGATTCTGAAATGGGTTTTGAAAAGTGTGAATGTGTGGATTTATGAGAGAAATTTGGGGAAGAAGAAGAGGGAGTGTCTGCCACCAGGTGACATGGGTTGGCCATTCATCGGAAACATGTGGTCTTTTCTCAGAGCTTTCAAGTCTAGCAATCCTGATGCCTTCATCTCCACTTTACTTCTCAGGCTATGCGGTACGGT...

CDS

Download CDS FASTA

1800 bp · LXL04_010512|LXL04_010512|OH1004|CDS

ATGGGGTTTGATGAATTGGGAGGGGTGAGTTATTATGTGGGAATTTTGGTGGGATTCATGTTGATTCTGAAATGGGTTTTGAAAAGTGTGAATGTGTGGATTTATGAGAGAAATTTGGGGAAGAAGAAGAGGGAGTGTCTGCCACCAGGTGACATGGGTTGGCCATTCATCGGAAACATGTGGTCTTTTCTCAGAGCTTTCAAGTCTAGCAATCCTGATGCCTTCATCTCCACTTTACTTCTCAGGCTATGCGGTACGGT...

Protein

Download Protein FASTA

599 aa · LXL04_010512|LXL04_010512|OH1004|PROTEIN

MGFDELGGVSYYVGILVGFMLILKWVLKSVNVWIYERNLGKKKRECLPPGDMGWPFIGNMWSFLRAFKSSNPDAFISTLLLRLCGTVPKWRGGSRRGQCPRRGRKKYTTPASFGVHRRGNANAGQRRVEASFDRSTVFFGNGLVDVSDGHVNIDLNAGEDVEADEFEDVEADPVPPPRTRPIGRDKAKYGSKGLYKSFMFGSPSIIVTIPEACRKVLYDDDAFQPGWPTATMELIGKKSFIGISYEEHKRLRKLTAAPVN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010512`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010512

Location Chr02:148132480-148140039 (+)

Description Similar to KAO1: Ent-kaurenoic acid oxidase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g05160`	Catalyzes three successive oxidations of ent-kaurenoic acid giving gibberellin 12 (GA12), a key step in gibberellins (GAs) biosynthesis.	No verified direct reference in this release
`At2g32440`	Catalyzes three successive oxidations of ent-kaurenoic acid giving gibberellin 12 (GA12), a key step in gibberellins (GAs) biosynthesis.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0110000`	Involved in gibberellin (GA) biosynthesis.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010512 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009685 gibberellin metabolic process Biological Process

GO:0009686 gibberellin biosynthetic process Biological Process

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0048868 pollen tube development Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005506 iron ion binding Molecular Function

GO:0020037 heme binding Molecular Function

GO:0051777 ent-kaurenoic acid monooxygenase activity Molecular Function

KEGG gene cross-reference

ath:AT1G05160

ath:AT2G32440

dosa:Os06g0110000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.876

Rank 1 · LXL04_010512 · OH-1004

Cytoplasm0.058

Rank 2 · LXL04_010512 · OH-1004

Nucleus0.043

Rank 3 · LXL04_010512 · OH-1004

Cell membrane0.041

Rank 4 · LXL04_010512 · OH-1004

Plastid0.038

Rank 5 · LXL04_010512 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p450194-577 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010512	`PF00067.28`	p450	194	577	1.4e-61	209.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O23051`	Arabidopsis thaliana	Ent-kaurenoic acid oxidase 1	69.853%	Swiss-Prot	moderate database homology
`Q9C5Y2`	Arabidopsis thaliana	Ent-kaurenoic acid oxidase 2	68.780%	Swiss-Prot	moderate database homology
`Q5VRM7`	Oryza sativa subsp. japonica	Ent-kaurenoic acid oxidase	56.971%	Swiss-Prot	moderate database homology

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