LXL04_010494 | RubberDandelionOmics

Gene overview

LXL04_010494

Reference: OH-1004 Chr: Chr02 Coordinates: 147723354-147725935 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1548 bp · LXL04_010494|LXL04_010494|OH1004|cDNA

ATGGCAGTTCACGTTAACAACATAGCCAATTTCACTTCCAATCTCTCCAAAACCCACAACCCTTCTTCCAAATCATCACCATTATCTTTTTTATCTTTTGGATCGAAATTCGAAAACCGCATAACGCGAATCGCTCTTTCTTCTAGTCAAAACCTCCGGCGAAACTCACCTACCATTTCAGCTTCTGTTGCCACCGCCGAGAAGCCGTCCACGGCACCGGAGGAGATTGTGTTGCAGCCCATCAAAGAGATATCTGGAAT...

CDS

Download CDS FASTA

1548 bp · LXL04_010494|LXL04_010494|OH1004|CDS

ATGGCAGTTCACGTTAACAACATAGCCAATTTCACTTCCAATCTCTCCAAAACCCACAACCCTTCTTCCAAATCATCACCATTATCTTTTTTATCTTTTGGATCGAAATTCGAAAACCGCATAACGCGAATCGCTCTTTCTTCTAGTCAAAACCTCCGGCGAAACTCACCTACCATTTCAGCTTCTGTTGCCACCGCCGAGAAGCCGTCCACGGCACCGGAGGAGATTGTGTTGCAGCCCATCAAAGAGATATCTGGAAT...

Protein

Download Protein FASTA

515 aa · LXL04_010494|LXL04_010494|OH1004|PROTEIN

MAVHVNNIANFTSNLSKTHNPSSKSSPLSFLSFGSKFENRITRIALSSSQNLRRNSPTISASVATAEKPSTAPEEIVLQPIKEISGIVNLPGSKSLSNRILLLAALSEGTTVVDNLLNSDDVHYMLGALRALGLRVEENGAIKRAIVEGCGGVFPVGREAKDEIQLFLGNAGTAMRPLTAAVTAAGGNSSYVLDGVPRMRERPIGDLVTGLKQLGADVDCYLGTNCPPVRVVGSGGLPGGKVKLSGSISSQYLTALLMAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010494`
TK1151 ID	TkA03G530790
OH-1004 ID	LXL04_010494
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_010494

Location Chr02:147723354-147725935 (+)

Description Similar to 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45300`	Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010494 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007623 circadian rhythm Biological Process

GO:0008652 amino acid biosynthetic process Biological Process

GO:0009073 aromatic amino acid family biosynthetic process Biological Process

GO:0009423 chorismate biosynthetic process Biological Process

GO:0009635 response to herbicide Biological Process

GO:0010597 green leaf volatile biosynthetic process Biological Process

GO:0018920 glyphosate metabolic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0003866 3-phosphoshikimate 1-carboxyvinyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G45300

nta:107813883

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.973

Rank 1 · LXL04_010494 · OH-1004

Mitochondrion0.054

Rank 2 · LXL04_010494 · OH-1004

Cytoplasm0.028

Rank 3 · LXL04_010494 · OH-1004

Nucleus0.022

Rank 4 · LXL04_010494 · OH-1004

Peroxisome0.016

Rank 5 · LXL04_010494 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00275.26EPSP_synthase79-509 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010494	`PF00275.26`	EPSP_synthase	79	509	1.8e-140	469.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P05466`	Arabidopsis thaliana	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic	75.670%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card