LXL04_010326 | RubberDandelionOmics

Gene overview

LXL04_010326

Reference: OH-1004 Chr: Chr02 Coordinates: 144295664-144296761 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1026 bp · LXL04_010326|LXL04_010326|OH1004|cDNA

ATGGCTTCATCTGTAAAGTTTACACTTAGTATCGCGTCTATTCTTTTTATAGGCATACTATGGTCTTCAGGGGTTACATGCCGTATGTTAAACAACGACTTACCCATGTCAAAGAAACATGAATTATGGATGGCACGTTACGCACGTGTGTACAATGATGACTCGGAGAAGGAAATGCGGTTCAACATATTCAAAGAGAACGTTGAATTCATAGAATCATTCAACAAAGTTGAAAAAAAGCCTTACAAACTAGCCGTTAA...

CDS

Download CDS FASTA

1026 bp · LXL04_010326|LXL04_010326|OH1004|CDS

ATGGCTTCATCTGTAAAGTTTACACTTAGTATCGCGTCTATTCTTTTTATAGGCATACTATGGTCTTCAGGGGTTACATGCCGTATGTTAAACAACGACTTACCCATGTCAAAGAAACATGAATTATGGATGGCACGTTACGCACGTGTGTACAATGATGACTCGGAGAAGGAAATGCGGTTCAACATATTCAAAGAGAACGTTGAATTCATAGAATCATTCAACAAAGTTGAAAAAAAGCCTTACAAACTAGCCGTTAA...

Protein

Download Protein FASTA

341 aa · LXL04_010326|LXL04_010326|OH1004|PROTEIN

MASSVKFTLSIASILFIGILWSSGVTCRMLNNDLPMSKKHELWMARYARVYNDDSEKEMRFNIFKENVEFIESFNKVEKKPYKLAVNEFADQTNEEFRASRNGYKSSSNKRTTPFRYENVTVVPPTMDWRKKGAVTPIKDQGQCGSCWAFSTIAATEGITQLTTGKLISLSEQELVDCDRSGEDQGCNGGEMEDGFEFIVNNKGINTEVAYPYQATDGTCNTNKESGHAASITGYEKVPANSETALLQAVSNQPVSVSID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010326`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010326

Location Chr02:144295664-144296761 (-)

Description Similar to OsI_14861: Senescence-specific cysteine protease SAG39

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XQE8`	Cysteine protease that may have a developmental senescence specific cell death function during apoptosis, heavy metal detoxification, and hypersensitive response.	No verified direct reference in this release
`Os04g0206300`	Cysteine protease that may have a developmental senescence specific cell death function during apoptosis, heavy metal detoxification, and hypersensitive response.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_010326 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010623 programmed cell death involved in cell development Biological Process

GO:0051603 proteolysis involved in protein catabolic process Biological Process

GO:0005615 extracellular space Cellular Component

GO:0005764 lysosome Cellular Component

GO:0005788 endoplasmic reticulum lumen Cellular Component

GO:0010282 senescence-associated vacuole Cellular Component

GO:0031410 cytoplasmic vesicle Cellular Component

KEGG gene cross-reference

osa:107276017

rcu:8278243

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.621

Rank 1 · LXL04_010326 · OH-1004

Extracellular0.210

Rank 2 · LXL04_010326 · OH-1004

Cytoplasm0.174

Rank 3 · LXL04_010326 · OH-1004

Endoplasmic reticulum0.114

Rank 4 · LXL04_010326 · OH-1004

Cell membrane0.103

Rank 5 · LXL04_010326 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08246.18Inhibitor_I2940-97 aa

PF00112.30Peptidase_C1123-339 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010326	`PF08246.18`	Inhibitor_I29	40	97	3.9e-18	66.2
LXL04_010326	`PF00112.30`	Peptidase_C1	123	339	3.4e-81	273.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`A2XQE8`	Oryza sativa subsp. indica	Senescence-specific cysteine protease SAG39	56.812%	Swiss-Prot	strong database homology
`Q7XWK5`	Oryza sativa subsp. japonica	Senescence-specific cysteine protease SAG39	56.812%	Swiss-Prot	strong database homology

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