LXL04_010319 | RubberDandelionOmics

Gene overview

LXL04_010319

Reference: OH-1004 Chr: Chr02 Coordinates: 144205319-144208334 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1155 bp · LXL04_010319|LXL04_010319|OH1004|cDNA

ATGGATTTTGGGTACCAAAATAAgatctttcttcttcttctccttcttgTTCTTCAACTCCAGGCGTTGGTTGCCGAAACACAAGTACTCTCATTATCAACATTCAGCAACAATACTAGTGTTAGTAGTTCATTAAGGGGAAGAAGTAGAAGAGTCGTTCCAAAGGGAAAACCCGTGGGAAGAAGAGGATTGTTAGGGTGTGATTTATACAAAGGAAGATGGATTGTGGATAATTCGTATCCTGGTTATGTAGCTTCGAG...

CDS

Download CDS FASTA

1155 bp · LXL04_010319|LXL04_010319|OH1004|CDS

ATGGATTTTGGGTACCAAAATAAGATCTTTCTTCTTCTTCTCCTTCTTGTTCTTCAACTCCAGGCGTTGGTTGCCGAAACACAAGTACTCTCATTATCAACATTCAGCAACAATACTAGTGTTAGTAGTTCATTAAGGGGAAGAAGTAGAAGAGTCGTTCCAAAGGGAAAACCCGTGGGAAGAAGAGGATTGTTAGGGTGTGATTTATACAAAGGAAGATGGATTGTGGATAATTCGTATCCTGGTTATGTAGCTTCGAG...

Protein

Download Protein FASTA

384 aa · LXL04_010319|LXL04_010319|OH1004|PROTEIN

MDFGYQNKIFLLLLLLVLQLQALVAETQVLSLSTFSNNTSVSSSLRGRSRRVVPKGKPVGRRGLLGCDLYKGRWIVDNSYPGYVASSCPYIDSEFDCLKHGRSDTQYLKYAWKPDSCNLPRFNGVDLLNKWRGKKVMFVGDSLSLNQWESLACLLHASVPNSKATFFRRDGLTSLAFQDYGVTIYLYRTPYLVDIKKQSIGNVLNLNSIQGGDAWRGMDVLVFNSWHWWTHTGNLQPFDYIQDGSTISKDMDRLTAYYKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010319`
TK1151 ID	TkA03G519300
OH-1004 ID	LXL04_010319
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 68.239 / OH-1004 56.510 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_010319

Location Chr02:144205319-144208334 (-)

Description Similar to TBL38: Protein trichome birefringence-like 38

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g29050`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g34070`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g42570`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g31110`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At3g14850`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010319 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009827 plant-type cell wall modification Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G29050

ath:AT2G31110

ath:AT2G34070

ath:AT2G42570

ath:AT3G14850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.339

Rank 1 · LXL04_010319 · OH-1004

Extracellular0.154

Rank 2 · LXL04_010319 · OH-1004

Cell membrane0.097

Rank 3 · LXL04_010319 · OH-1004

Endoplasmic reticulum0.074

Rank 4 · LXL04_010319 · OH-1004

Lysosome / Vacuole0.068

Rank 5 · LXL04_010319 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416.12PMR5N66-118 aa

PF13839.13PC-Esterase119-380 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010319	`PF14416.12`	PMR5N	66	118	1.5e-20	74.0
LXL04_010319	`PF13839.13`	PC-Esterase	119	380	1.2e-89	301.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VY22`	Arabidopsis thaliana	Protein trichome birefringence-like 38	61.878%	Swiss-Prot	strong database homology
`O22960`	Arabidopsis thaliana	Protein trichome birefringence-like 37	64.198%	Swiss-Prot	strong database homology
`Q9SIN2`	Arabidopsis thaliana	Protein trichome birefringence-like 39	55.493%	Swiss-Prot	strong database homology
`Q67XC4`	Arabidopsis thaliana	Protein trichome birefringence-like 40	53.927%	Swiss-Prot	strong database homology
`F4IWA8`	Arabidopsis thaliana	Protein trichome birefringence-like 41	52.322%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card