LXL04_010259 | RubberDandelionOmics

Gene overview

LXL04_010259

Reference: OH-1004 Chr: Chr02 Coordinates: 143365580-143368884 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1887 bp · LXL04_010259|LXL04_010259|OH1004|cDNA

ATGCTGAGGCCAATATCACTGCACATCTTCCTCCTTGTTTTCCTTGCAGCTTTCACACCTTCTTACCAAGCACCATATGCTCTGAGAATAAGCTGTGGAGCTCGCAAAGACGTCCACACAGCACCGACAAATACATTTTGGTACAGAGATTTCGGATACAGCGGAGGCCAATTAGCTAACGCAACTCGTCCAAGCTACATCACTCCTCCTCTCACCACACTTCGCTACTTCCCTCTATCTGCGGGTCCCGAAAACTGCTA...

CDS

Download CDS FASTA

1887 bp · LXL04_010259|LXL04_010259|OH1004|CDS

ATGCTGAGGCCAATATCACTGCACATCTTCCTCCTTGTTTTCCTTGCAGCTTTCACACCTTCTTACCAAGCACCATATGCTCTGAGAATAAGCTGTGGAGCTCGCAAAGACGTCCACACAGCACCGACAAATACATTTTGGTACAGAGATTTCGGATACAGCGGAGGCCAATTAGCTAACGCAACTCGTCCAAGCTACATCACTCCTCCTCTCACCACACTTCGCTACTTCCCTCTATCTGCGGGTCCCGAAAACTGCTA...

Protein

Download Protein FASTA

628 aa · LXL04_010259|LXL04_010259|OH1004|PROTEIN

MLRPISLHIFLLVFLAAFTPSYQAPYALRISCGARKDVHTAPTNTFWYRDFGYSGGQLANATRPSYITPPLTTLRYFPLSAGPENCYHIDRVPHGHYSVRVFFALVKDPTFDNEPLFDVSVEGTLVYSLSSGWSNHDDEQAFVEALVFLEDSTASICLHSTGHGDPAILSIEVLQVGNNAYNFGPGWGRGTILRTHKRLSCGAKDPKFDADYSGNHWGGDRFWNSITTFGQNSDKPLTTKTNIKLSPKVPNYYPEALYQT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010259`
TK1151 ID	TkA03G515900
OH-1004 ID	LXL04_010259
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010259

Location Chr02:143365580-143368884 (+)

Description Similar to RLP4: Receptor-like protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g28340`	Receptor-like protein 4.	No verified direct reference in this release
`At2g14440`	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440.	No verified direct reference in this release
`At2g14510`	Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510.	No verified direct reference in this release
`At1g51820`	Probable LRR receptor-like serine/threonine-protein kinase At1g51820.	No verified direct reference in this release
`At3g21340`	Probable receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010259 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0042545 cell wall modification Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0031252 cell leading edge Cellular Component

GO:0031254 cell trailing edge Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004714 transmembrane receptor protein tyrosine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G28340

ath:AT1G51820

ath:AT2G14510

ath:AT3G21340

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.697

Rank 1 · LXL04_010259 · OH-1004

Extracellular0.124

Rank 2 · LXL04_010259 · OH-1004

Cytoplasm0.099

Rank 3 · LXL04_010259 · OH-1004

Endoplasmic reticulum0.094

Rank 4 · LXL04_010259 · OH-1004

Lysosome / Vacuole0.059

Rank 5 · LXL04_010259 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12819.14Malectin_like30-364 aa

PF11721.15Malectin203-357 aa

PF13855.13LRR_8437-480 aa

PF13855.13LRR_8446-505 aa

PF12799.14LRR_4470-506 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010259	`PF12819.14`	Malectin_like	30	364	3.7e-52	178.4
LXL04_010259	`PF11721.15`	Malectin	203	357	4.8e-20	72.9
LXL04_010259	`PF13855.13`	LRR_8	437	480	7.2e-15	55.2
LXL04_010259	`PF13855.13`	LRR_8	446	505	7.2e-15	55.2
LXL04_010259	`PF12799.14`	LRR_4	470	506	1.1e-06	29.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HWL3`	Arabidopsis thaliana	Receptor-like protein 4	69.256%	Swiss-Prot	strong database homology
`Q9ZQQ7`	Arabidopsis thaliana	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440	26.888%	Swiss-Prot	weak database homology
`Q9ZQR3`	Arabidopsis thaliana	Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510	26.119%	Swiss-Prot	weak database homology
`C0LGG3`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g51820	25.963%	Swiss-Prot	weak database homology
`Q9LIG2`	Arabidopsis thaliana	Receptor-like protein kinase At3g21340	27.394%	Swiss-Prot	weak database homology

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