LXL04_010218 | RubberDandelionOmics

Gene overview

LXL04_010218

Reference: OH-1004 Chr: Chr02 Coordinates: 142372031-142374444 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1275 bp · LXL04_010218|LXL04_010218|OH1004|cDNA

ATGAAAGCAGGGGTAATCCTGGTATTGGGCTTTCTGTCCTTGGCGCTGATCGTACCAGGCTCATCGGCTTCCGATGATCGCCGGcaaaaatggtggaaatggcCGTCGACGGGAAAATCGATCTGTTCGTCAGTTGTACTTCCTCTATACGGCAATGTTTATCCTCAAGGGTATTATTATGCTCAGATAAACATCGGACATCCTCCGCGGCCTTATTTTGTGGACCCTGATACGGGCAGCGACTTAACTTGGCTTCAGTG...

CDS

Download CDS FASTA

1275 bp · LXL04_010218|LXL04_010218|OH1004|CDS

ATGAAAGCAGGGGTAATCCTGGTATTGGGCTTTCTGTCCTTGGCGCTGATCGTACCAGGCTCATCGGCTTCCGATGATCGCCGGCAAAAATGGTGGAAATGGCCGTCGACGGGAAAATCGATCTGTTCGTCAGTTGTACTTCCTCTATACGGCAATGTTTATCCTCAAGGGTATTATTATGCTCAGATAAACATCGGACATCCTCCGCGGCCTTATTTTGTGGACCCTGATACGGGCAGCGACTTAACTTGGCTTCAGTG...

Protein

Download Protein FASTA

424 aa · LXL04_010218|LXL04_010218|OH1004|PROTEIN

MKAGVILVLGFLSLALIVPGSSASDDRRQKWWKWPSTGKSICSSVVLPLYGNVYPQGYYYAQINIGHPPRPYFVDPDTGSDLTWLQCDAPCVHCTQVVVHGIAPHPYYRPNNDLVPCKDPLCASLHSGDHRCDDPGQCDYEVEYADGGSSLGVLINDVSLLNLTTGVRITPRLAIGCGYDQIPGPSYQPLDGVLGLGKGKTGIVSQLHSQGLIRNVVGHCFSSRGGGFLFFGDDVYDSSRVVSTPMSRDYRKHYSPGYGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010218`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_010218

Location Chr02:142372031-142374444 (+)

Description Similar to ASP1: Aspartic proteinase Asp1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g49050`	Involved in proteolytic processing of BAG6 and plant basal immunity.	Aspartyl Protease-Mediated Cleavage of BAG6 Is Necessary for Autophagy and Fungal Resistance in Plants.2016 · DOI: 10.1105/tpc.15.00626
`At1g65240`	Displays aspartic proteolytic activity.	No verified direct reference in this release
`At5g36260`	Displays aspartic proteolytic activity.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0184800`	Aspartic proteinase Asp1.	No verified direct reference in this release
`UniProt: A2ZC67`	Possesses protease activity in vitro.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010218 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009555 pollen development Biological Process

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G49050

ath:AT1G65240

ath:AT5G36260

dosa:Os11g0184800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.308

Rank 1 · LXL04_010218 · OH-1004

Lysosome / Vacuole0.158

Rank 2 · LXL04_010218 · OH-1004

Extracellular0.150

Rank 3 · LXL04_010218 · OH-1004

Endoplasmic reticulum0.133

Rank 4 · LXL04_010218 · OH-1004

Cytoplasm0.099

Rank 5 · LXL04_010218 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14543.12TAXi_N59-233 aa

PF00026.29Asp59-408 aa

PF14541.12TAXi_C274-408 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010218	`PF14543.12`	TAXi_N	59	233	1.6e-46	159.4
LXL04_010218	`PF00026.29`	Asp	59	408	4.7e-15	56.5
LXL04_010218	`PF14541.12`	TAXi_C	274	408	1.1e-14	55.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M9A8`	Arabidopsis thaliana	Aspartyl protease APCB1	39.702%	Swiss-Prot	moderate database homology
`Q9S9K4`	Arabidopsis thaliana	Aspartic proteinase 39	28.827%	Swiss-Prot	weak database homology
`Q4V3D2`	Arabidopsis thaliana	Aspartic proteinase 36	28.173%	Swiss-Prot	weak database homology
`Q0IU52`	Oryza sativa subsp. japonica	Aspartic proteinase Asp1	45.823%	Swiss-Prot	moderate database homology
`A2ZC67`	Oryza sativa subsp. indica	Aspartic proteinase Asp1	45.063%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card