Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1431 bp · LXL04_010215|LXL04_010215|OH1004|cDNA
ATGGATTGTAAAAAACGCAAGGATTTGCATCCAGTCACAGATCTTGTCTTTGCCTCGATTCAAATCTACATGATTACGCTTATTGAAATGGCGGCAATTGCATTTAATCAGTTTGCCGAATGCGTTACTTGCCATTCTTGGAGCCCCGATCACTCAATGATAGCTCTTTGTCCAAACAATAGTGAGGTTCACATTTATAAATTAGCTGAAGAAAATTGGGAAAGAATTCATGTTCTGCAAAAGCATGACCAAATCGTTGC...
1431 bp · LXL04_010215|LXL04_010215|OH1004|CDS
ATGGATTGTAAAAAACGCAAGGATTTGCATCCAGTCACAGATCTTGTCTTTGCCTCGATTCAAATCTACATGATTACGCTTATTGAAATGGCGGCAATTGCATTTAATCAGTTTGCCGAATGCGTTACTTGCCATTCTTGGAGCCCCGATCACTCAATGATAGCTCTTTGTCCAAACAATAGTGAGGTTCACATTTATAAATTAGCTGAAGAAAATTGGGAAAGAATTCATGTTCTGCAAAAGCATGACCAAATCGTTGC...
Protein
Download Protein FASTA476 aa · LXL04_010215|LXL04_010215|OH1004|PROTEIN
MDCKKRKDLHPVTDLVFASIQIYMITLIEMAAIAFNQFAECVTCHSWSPDHSMIALCPNNSEVHIYKLAEENWERIHVLQKHDQIVAGIDWSKSSNRIVTVSHDRNSYVWNQEGSVWVPTLVILRLNRAALCVQWSPKGNKFAVGSGAKTVCICYYEQENNWWVSKLIRKKHDSSVTSVAWHPNNVLIATTSTDGKCRVFSTFIKGVDAGKPRKSGSGSTSDAKFGEQQIVQLDLSFCWSFGVKWSPTGNSLAYVGHNSM...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_010215 |
|---|---|
| TK1151 ID | TkA03G512070 |
| OH-1004 ID | LXL04_010215 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 75.300 |
| Protein coverage (%) | TK1151 98.182 / OH-1004 45.798Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_010215 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:142356223-142361066 (+) | |||||||||
| Description | Similar to ARPC1B: Actin-related protein 2/3 complex subunit 1B | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006887 exocytosis Biological Process GO:0006909 phagocytosis Biological Process GO:0007015 actin filament organization Biological Process GO:0030041 actin filament polymerization Biological Process GO:0034314 Arp2/3 complex-mediated actin nucleation Biological Process GO:0045010 actin nucleation Biological Process GO:0001891 phagocytic cup Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005885 Arp2/3 protein complex Cellular Component GO:0005905 clathrin-coated pit Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G30910 ath:AT2G31300 ddi:DDB_G0277825 mmu:56443 rno:81824 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF25174.2Beta-prop_THOC322-118 aaPF23414.2Beta-prop_EML_234-113 aaPF25173.2Beta-prop_WDR3_1st34-112 aaPF24807.2WD40_CDC20-Fz36-202 aaPF24814.2WD40_Prp1936-200 aaPF24805.2EIF3I36-112 aaPF23389.2Beta-prop_WDR19_1st37-116 aaPF25175.2Beta-prop_WDR538-202 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_010215 | PF25174.2 | Beta-prop_THOC3 | 22 | 118 | 1e-20 | 74.6 |
| LXL04_010215 | PF23414.2 | Beta-prop_EML_2 | 34 | 113 | 5e-21 | 76.0 |
| LXL04_010215 | PF25173.2 | Beta-prop_WDR3_1st | 34 | 112 | 1.4e-12 | 48.4 |
| LXL04_010215 | PF24807.2 | WD40_CDC20-Fz | 36 | 202 | 5.7e-13 | 49.5 |
| LXL04_010215 | PF24814.2 | WD40_Prp19 | 36 | 200 | 9.2e-12 | 45.3 |
| LXL04_010215 | PF24805.2 | EIF3I | 36 | 112 | 4.8e-07 | 29.9 |
| LXL04_010215 | PF23389.2 | Beta-prop_WDR19_1st | 37 | 116 | 1.3e-10 | 41.6 |
| LXL04_010215 | PF25175.2 | Beta-prop_WDR5 | 38 | 202 | 2.7e-19 | 70.3 |
| LXL04_010215 | PF23381.2 | Beta-prop_IFT122_1st | 39 | 115 | 8.2e-19 | 68.7 |
| LXL04_010215 | PF23775.2 | Beta-prop_RIG_2nd | 39 | 137 | 1.3e-09 | 38.6 |
| LXL04_010215 | PF23383.2 | Beta-prop_IFT140_1st | 39 | 112 | 5.1e-09 | 36.1 |
| LXL04_010215 | PF24817.2 | WD40_WDHD1_1st | 40 | 113 | 2.2e-13 | 50.8 |
| LXL04_010215 | PF24796.2 | WDR55 | 40 | 113 | 2.7e-08 | 34.0 |
| LXL04_010215 | PF25172.2 | Beta-prop_WDR3_2nd | 40 | 200 | 5.5e-06 | 26.5 |
| LXL04_010215 | PF25460.2 | Beta-prop_Aladin | 41 | 153 | 3.9e-07 | 30.2 |
| LXL04_010215 | PF24797.2 | Beta-prop_WDR35_TULP_N | 74 | 202 | 1.6e-08 | 34.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.