LXL04_010182 | RubberDandelionOmics

Gene overview

LXL04_010182

Reference: OH-1004 Chr: Chr02 Coordinates: 141579506-141580885 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1380 bp · LXL04_010182|LXL04_010182|OH1004|cDNA

ATGGCAATGAATTACAAGATTGATCAATTATCACCGACTCTCTTATTTGTTTTCGCCGTGAAACTGAGAAGGATTGTCATCCTGCTACTCTCACCTTTTCAGACCACCGCTTCCTCTGCCGTTATAGCATTAACCACCGGTGAATCCAAAATGAGGGCTTTTGGAAATATTCTTACCGCTGTTCTCCTCTGCTTCTTCCTGTTCACTGAACTATCCACGGCGCATATCATATCTCTGAAGCTCCGATCCGATAACCGACA...

CDS

Download CDS FASTA

1380 bp · LXL04_010182|LXL04_010182|OH1004|CDS

ATGGCAATGAATTACAAGATTGATCAATTATCACCGACTCTCTTATTTGTTTTCGCCGTGAAACTGAGAAGGATTGTCATCCTGCTACTCTCACCTTTTCAGACCACCGCTTCCTCTGCCGTTATAGCATTAACCACCGGTGAATCCAAAATGAGGGCTTTTGGAAATATTCTTACCGCTGTTCTCCTCTGCTTCTTCCTGTTCACTGAACTATCCACGGCGCATATCATATCTCTGAAGCTCCGATCCGATAACCGACA...

Protein

Download Protein FASTA

459 aa · LXL04_010182|LXL04_010182|OH1004|PROTEIN

MAMNYKIDQLSPTLLFVFAVKLRRIVILLLSPFQTTASSAVIALTTGESKMRAFGNILTAVLLCFFLFTELSTAHIISLKLRSDNRHIIPFSDFEFSNVGYVSFFISSVTVTSNSSRPDPSRIGFFLQPRELTNQQQPFDFQQNATICALDLKNNTVLFTFQNLSHDPQFSVNQSWPVTFSGMKSLFFVNCNNESLVTIEGRAELYNINDTKNYLTLSLTQLPFLCFIFFFIYLSFTGVWILVWFKNRCSFNRTHLLMGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010182`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010182

Location Chr02:141579506-141580885 (+)

Description Similar to CAND7: Protein CANDIDATE G-PROTEIN COUPLED RECEPTOR 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g18520`	Plays a role in plants and microbes interactions.	Two G-protein-coupled-receptor candidates, Cand2 and Cand7, are involved in Arabidopsis root growth mediated by the bacterial quorum-sensing signals N-acyl-homoserine lactones.2012 · DOI: 10.1016/j.bbrc.2011.12.066
`At5g02630`	G protein-coupled receptor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010182 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0007186 G protein-coupled receptor signaling pathway Biological Process

GO:0010015 root morphogenesis Biological Process

GO:0072583 clathrin-dependent endocytosis Biological Process

GO:0072659 protein localization to plasma membrane Biological Process

GO:2001008 positive regulation of cellulose biosynthetic process Biological Process

GO:0005654 nucleoplasm Cellular Component

GO:0005769 early endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT5G02630

ath:AT5G18520

hsa:57720

mmu:277463

rno:311857

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.277

Rank 1 · LXL04_010182 · OH-1004

Endoplasmic reticulum0.276

Rank 2 · LXL04_010182 · OH-1004

Golgi apparatus0.270

Rank 3 · LXL04_010182 · OH-1004

Cytoplasm0.184

Rank 4 · LXL04_010182 · OH-1004

Cell membrane0.159

Rank 5 · LXL04_010182 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21904.2CAND6-7_N78-207 aa

PF06814.20GOST_TM225-448 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010182	`PF21904.2`	CAND6-7_N	78	207	9.1e-33	114.0
LXL04_010182	`PF06814.20`	GOST_TM	225	448	3e-14	53.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JY11`	Arabidopsis thaliana	Protein CANDIDATE G PROTEIN-COUPLED RECEPTOR 7	39.216%	Swiss-Prot	moderate database homology
`Q9LZ39`	Arabidopsis thaliana	Protein CANDIDATE G PROTEIN-COUPLED RECEPTOR 6	33.007%	Swiss-Prot	moderate database homology

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