LXL04_010039 | RubberDandelionOmics

Gene overview

LXL04_010039

Reference: OH-1004 Chr: Chr02 Coordinates: 138697151-138699609 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1440 bp · LXL04_010039|LXL04_010039|OH1004|cDNA

ATGTCCAACAAATCTGTAACAAAATTCGAAGCTTTAACAATGGCGTTAGCTTTTACTTCTTCTACTTCCATTgcattttcttcatcttcttcgtcgCGTACAGAACAAGGGATTCATGTGAGTTCTACTAAATTTCAACCATCGGACGTGTCTCATTTGGTATCACCGGCGGCTTTCAATCTATCTCGGAAGCGGTCTGCGGCCGTGAAGGCGTTAAATGCCGAATCGAGGAGGAATCATTCAGTTGTTCCCTCAGCTGC...

CDS

Download CDS FASTA

1440 bp · LXL04_010039|LXL04_010039|OH1004|CDS

ATGTCCAACAAATCTGTAACAAAATTCGAAGCTTTAACAATGGCGTTAGCTTTTACTTCTTCTACTTCCATTGCATTTTCTTCATCTTCTTCGTCGCGTACAGAACAAGGGATTCATGTGAGTTCTACTAAATTTCAACCATCGGACGTGTCTCATTTGGTATCACCGGCGGCTTTCAATCTATCTCGGAAGCGGTCTGCGGCCGTGAAGGCGTTAAATGCCGAATCGAGGAGGAATCATTCAGTTGTTCCCTCAGCTGC...

Protein

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479 aa · LXL04_010039|LXL04_010039|OH1004|PROTEIN

MSNKSVTKFEALTMALAFTSSTSIAFSSSSSSRTEQGIHVSSTKFQPSDVSHLVSPAAFNLSRKRSAAVKALNAESRRNHSVVPSAATTFVPDVVEKGVEVEDFEKLAKDLENASPLEIMDKALEKYGNDIAIAFSGAEDVALIEYAHLTGRPYRVFSLDTGRLNPETYKFFDAVEKHYNIRIEYMFPDSVEVQALVRTKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEVPVVQVDPVFEGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010039`
TK1151 ID	TkA03G492470
OH-1004 ID	LXL04_010039
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 97.286 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010039

Location Chr02:138697151-138699609 (-)

Description Similar to APR3: 5'-adenylylsulfate reductase 3, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g21990`	Reduces sulfate for Cys biosynthesis.	No verified direct reference in this release
`At4g04610`	Reduces sulfate for Cys biosynthesis.	No verified direct reference in this release
`At1g62180`	Reduces sulfate for Cys biosynthesis.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0509800`	Reduces sulfate for Cys biosynthesis.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010039 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000103 sulfate assimilation Biological Process

GO:0019344 L-cysteine biosynthetic process Biological Process

GO:0019379 sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) Biological Process

GO:0070814 hydrogen sulfide biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity Molecular Function

GO:0009973 adenylyl-sulfate reductase activity Molecular Function

GO:0033741 adenylyl-sulfate reductase (glutathione) activity Molecular Function

GO:0043866 adenylyl-sulfate reductase (thioredoxin) activity Molecular Function

KEGG gene cross-reference

ath:AT1G62180

ath:AT4G04610

ath:AT4G21990

dosa:Os07g0509800

pae:PA1756

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.976

Rank 1 · LXL04_010039 · OH-1004

Mitochondrion0.033

Rank 2 · LXL04_010039 · OH-1004

Cytoplasm0.019

Rank 3 · LXL04_010039 · OH-1004

Nucleus0.013

Rank 4 · LXL04_010039 · OH-1004

Peroxisome0.012

Rank 5 · LXL04_010039 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01507.26PAPS_reduct131-311 aa

PF00085.27Thioredoxin384-476 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010039	`PF01507.26`	PAPS_reduct	131	311	5.3e-48	164.1
LXL04_010039	`PF00085.27`	Thioredoxin	384	476	2.3e-10	41.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P92980`	Arabidopsis thaliana	5'-adenylylsulfate reductase 3, chloroplastic	80.516%	Swiss-Prot	strong database homology
`P92979`	Arabidopsis thaliana	5'-adenylylsulfate reductase 1, chloroplastic	77.049%	Swiss-Prot	strong database homology
`P92981`	Arabidopsis thaliana	5'-adenylylsulfate reductase 2, chloroplastic	72.584%	Swiss-Prot	strong database homology
`Q6Z4A7`	Oryza sativa subsp. japonica	Probable 5'-adenylylsulfate reductase 1, chloroplastic	75.781%	Swiss-Prot	strong database homology

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