LXL04_010038 | RubberDandelionOmics

Gene overview

LXL04_010038

Reference: OH-1004 Chr: Chr02 Coordinates: 138690045-138693211 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

651 bp · LXL04_010038|LXL04_010038|OH1004|cDNA

ATGAAGAGGTTAGAGTATGAAATCTCTCAAAAAGGGTTTTCATCTTCCTTTGAAACCATGGGATATTCTTCTGATGAGAGACCAAAGGTTTCTCGCCGGCGATTGGATGAAAACTCATCTGACAAAGGATTGAACAAACCCGATATTGTCCGAGACTATAATAGGTCGGACATTCCCCGGCTCCGGTGGTCAGATGAGCTTCATCAACTTTTTGAAAATGTAGTCGAAAGGCTTGGTGGTGTAGAGAGAGCAACTCCGAA...

CDS

Download CDS FASTA

651 bp · LXL04_010038|LXL04_010038|OH1004|CDS

ATGAAGAGGTTAGAGTATGAAATCTCTCAAAAAGGGTTTTCATCTTCCTTTGAAACCATGGGATATTCTTCTGATGAGAGACCAAAGGTTTCTCGCCGGCGATTGGATGAAAACTCATCTGACAAAGGATTGAACAAACCCGATATTGTCCGAGACTATAATAGGTCGGACATTCCCCGGCTCCGGTGGTCAGATGAGCTTCATCAACTTTTTGAAAATGTAGTCGAAAGGCTTGGTGGTGTAGAGAGAGCAACTCCGAA...

Protein

Download Protein FASTA

216 aa · LXL04_010038|LXL04_010038|OH1004|PROTEIN

MKRLEYEISQKGFSSSFETMGYSSDERPKVSRRRLDENSSDKGLNKPDIVRDYNRSDIPRLRWSDELHQLFENVVERLGGVERATPKMVLHMMNVKGLTVSHIKSHLQMCRSLKKEQNRPGGEMVEGALTNSNSRQIVSRNHDDQEEVVEENGEYKAAVVFKNFINTGFTSNGGQEGLESSSFGSYMELTPEGQSASFLEASSGNVKDVSLELTLG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010038`
TK1151 ID	TkA03G492440
OH-1004 ID	LXL04_010038
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010038

Location Chr02:138690045-138693211 (-)

Description Similar to At1g14600: Putative Myb family transcription factor At1g14600

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g14600`	Putative transcription factor.	No verified direct reference in this release
`At5g42630`	Probable transcription factor that regulates carpel integuments formation.	ABERRANT TESTA SHAPE encodes a KANADI family member, linking polarity determination to separation and growth of Arabidopsis ovule integuments.2006 · DOI: 10.1111/j.1365-313x.2006.02717.x A new dominant Arabidopsis transparent testa mutant, sk21-D, and modulation of seed flavonoid biosynthesis by KAN4.2010 · DOI: 10.1111/j.1467-7652.2010.00525.x
`At5g16560`	Transcriptional repressor that regulates lateral organ polarity.	ABERRANT TESTA SHAPE encodes a KANADI family member, linking polarity determination to separation and growth of Arabidopsis ovule integuments.2006 · DOI: 10.1111/j.1365-313x.2006.02717.x KANADI and class III HD-Zip gene families regulate embryo patterning and modulate auxin flow during embryogenesis in Arabidopsis.2007 · DOI: 10.1105/tpc.106.047472 KANADI1 regulates adaxial-abaxial polarity in Arabidopsis by directly repressing the transcription of ASYMMETRIC LEAVES2.2008 · DOI: 10.1073/pnas.0803997105

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0670300`	Probable transcription factor involved in the regulation of plant height by elongating internode cell length.	OsMPH1 regulates plant height and improves grain yield in rice.2017 · DOI: 10.1371/journal.pone.0180825 OsMYB45 plays an important role in rice resistance to cadmium stress.2017 · DOI: 10.1016/j.plantsci.2017.08.002
`Os04g0566600`	Transcriptional repressor that plays a role in the regulation of organ identity and spikelet meristem determinacy.	MORE FLORET1 Encodes a MYB Transcription Factor That Regulates Spikelet Development in Rice.2020 · DOI: 10.1104/pp.20.00658

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010038 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009943 adaxial/abaxial axis specification Biological Process

GO:0009944 polarity specification of adaxial/abaxial axis Biological Process

GO:0009956 radial pattern formation Biological Process

GO:0010051 xylem and phloem pattern formation Biological Process

GO:0010158 abaxial cell fate specification Biological Process

GO:0010582 floral meristem determinacy Biological Process

GO:0010629 negative regulation of gene expression Biological Process

GO:0030154 cell differentiation Biological Process

GO:0048440 carpel development Biological Process

GO:0048481 plant ovule development Biological Process

KEGG gene cross-reference

ath:AT1G14600

ath:AT5G16560

ath:AT5G42630

dosa:Os04g0566600

dosa:Os06g0670300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.975

Rank 1 · LXL04_010038 · OH-1004

Cytoplasm0.090

Rank 2 · LXL04_010038 · OH-1004

Cell membrane0.022

Rank 3 · LXL04_010038 · OH-1004

Endoplasmic reticulum0.012

Rank 4 · LXL04_010038 · OH-1004

Plastid0.010

Rank 5 · LXL04_010038 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249.38Myb_DNA-binding60-110 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010038	`PF00249.38`	Myb_DNA-binding	60	110	2.6e-06	28.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q700D9`	Arabidopsis thaliana	Putative Myb family transcription factor At1g14600	62.903%	Swiss-Prot	weak database homology
`Q9FJV5`	Arabidopsis thaliana	Probable transcription factor KAN4	46.809%	Swiss-Prot	weak database homology
`Q93WJ9`	Arabidopsis thaliana	Transcription repressor KAN1	56.250%	Swiss-Prot	weak database homology
`A0A0P0X0C0`	Oryza sativa subsp. japonica	Myb family transcription factor MPH1	40.517%	Swiss-Prot	moderate database homology
`A3AWH5`	Oryza sativa subsp. japonica	Myb family transcription factor MOF1	60.317%	Swiss-Prot	weak database homology

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