LXL04_010018 | RubberDandelionOmics

Gene overview

LXL04_010018

Reference: OH-1004 Chr: Chr02 Coordinates: 137925116-137925981 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

711 bp · LXL04_010018|LXL04_010018|OH1004|cDNA

ATGAAATCTTCACGAAGAATCCGATCATACTCTACCTCTTTCTCCTCGGCCGACatcaccgccaccaccaccaccaccgtcACTTACGCTTTCGAAGATGACAATTTTACAGCTAATCCCCAAACAACTTCCACCGAAATCCCCATCACCTTTCACCTCCCCGATCGTCAATCCACTGCAGCTGTTAAGATACAATCAGCTTACAGATCTCATGCAATCCGCAACTTAACCAACAAGATTAGAGCAGTCAATTCCGAAGC...

CDS

Download CDS FASTA

711 bp · LXL04_010018|LXL04_010018|OH1004|CDS

ATGAAATCTTCACGAAGAATCCGATCATACTCTACCTCTTTCTCCTCGGCCGACATCACCGCCACCACCACCACCACCGTCACTTACGCTTTCGAAGATGACAATTTTACAGCTAATCCCCAAACAACTTCCACCGAAATCCCCATCACCTTTCACCTCCCCGATCGTCAATCCACTGCAGCTGTTAAGATACAATCAGCTTACAGATCTCATGCAATCCGCAACTTAACCAACAAGATTAGAGCAGTCAATTCCGAAGC...

Protein

Download Protein FASTA

236 aa · LXL04_010018|LXL04_010018|OH1004|PROTEIN

MKSSRRIRSYSTSFSSADITATTTTTVTYAFEDDNFTANPQTTSTEIPITFHLPDRQSTAAVKIQSAYRSHAIRNLTNKIRAVNSEADKLQRLIQMQDTVDAVRTNNRERVKINEALMKLLFTLDSVPGIDPTVREFRRNVSRRIVGLQEILDSICEATERNWDDFLRDWDDVIGFNAYKSFFVNEILWLLMKLQSRQHLQPPLSLSSMIPVFCLTDNNFSCFRVFTCIVPSNRSC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010018`
TK1151 ID	TkA03G489720
OH-1004 ID	LXL04_010018
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.400
Protein coverage (%)	TK1151 81.991 / OH-1004 73.729 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_010018

Location Chr02:137925116-137925981 (+)

Description Similar to BAG5: BAG family molecular chaperone regulator 5, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12060`	Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.	No verified direct reference in this release
`At2g46240`	Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.	AtBAG6, a novel calmodulin-binding protein, induces programmed cell death in yeast and plants.2006 · DOI: 10.1038/sj.cdd.4401712 Dissecting the proteome dynamics of the early heat stress response leading to plant survival or death in Arabidopsis.2016 · DOI: 10.1111/pce.12664 Aspartyl Protease-Mediated Cleavage of BAG6 Is Necessary for Autophagy and Fungal Resistance in Plants.2016 · DOI: 10.1105/tpc.15.00626

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0719700`	Co-chaperone that regulates stress responses (Probable).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010018 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0006914 autophagy Biological Process

GO:0009408 response to heat Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0010508 positive regulation of autophagy Biological Process

GO:0012502 induction of programmed cell death Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0005516 calmodulin binding Molecular Function

GO:0051087 protein-folding chaperone binding Molecular Function

KEGG gene cross-reference

ath:AT1G12060

ath:AT2G46240

dosa:Os02g0719700

osa:4330543

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.483

Rank 1 · LXL04_010018 · OH-1004

Nucleus0.400

Rank 2 · LXL04_010018 · OH-1004

Cell membrane0.119

Rank 3 · LXL04_010018 · OH-1004

Endoplasmic reticulum0.095

Rank 4 · LXL04_010018 · OH-1004

Plastid0.067

Rank 5 · LXL04_010018 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02179.22BAG80-154 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010018	`PF02179.22`	BAG	80	154	1.8e-13	51.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O65373`	Arabidopsis thaliana	BAG family molecular chaperone regulator 5, mitochondrial	52.899%	Swiss-Prot	moderate database homology
`O82345`	Arabidopsis thaliana	BAG family molecular chaperone regulator 6	28.319%	Swiss-Prot	weak database homology
`Q6ZI01`	Oryza sativa subsp. japonica	BAG family molecular chaperone regulator 6, mitochondrial	42.857%	Swiss-Prot	moderate database homology

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