LXL04_009981 | RubberDandelionOmics

Gene overview

LXL04_009981

Reference: OH-1004 Chr: Chr02 Coordinates: 137213588-137215091 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1239 bp · LXL04_009981|LXL04_009981|OH1004|cDNA

ATGGGTTTAAGCCAACAAGGGGTATTTCTGTCATTTACCATAGTACTAACAGCTCTCTTCCTCTCATCCCACGCCCAAACATGCTCCAATTACGCATTCCAAAGCAACAGAGTATTCACCGCTTGCAACGATCTCCCGGTTTTAAACTCGTTTCTTCACTACACATACAACCCGTCTTCCCAAACACTCGCAATCGCTTACCGTCACACCAACGTCGATTCCTCGAAATGGGTCGCGTGGGCGATTAATCCGACTTCTCA...

CDS

Download CDS FASTA

1239 bp · LXL04_009981|LXL04_009981|OH1004|CDS

ATGGGTTTAAGCCAACAAGGGGTATTTCTGTCATTTACCATAGTACTAACAGCTCTCTTCCTCTCATCCCACGCCCAAACATGCTCCAATTACGCATTCCAAAGCAACAGAGTATTCACCGCTTGCAACGATCTCCCGGTTTTAAACTCGTTTCTTCACTACACATACAACCCGTCTTCCCAAACACTCGCAATCGCTTACCGTCACACCAACGTCGATTCCTCGAAATGGGTCGCGTGGGCGATTAATCCGACTTCTCA...

Protein

Download Protein FASTA

412 aa · LXL04_009981|LXL04_009981|OH1004|PROTEIN

MGLSQQGVFLSFTIVLTALFLSSHAQTCSNYAFQSNRVFTACNDLPVLNSFLHYTYNPSSQTLAIAYRHTNVDSSKWVAWAINPTSQGMAGSQALVAFQQSDGTMKAYTSPVTGYSTQLAEGDLSFPVSNLSATYSNNEIVIFATLGLNGSGVVNQVWQEGQLSGSVPTAHATSGANVRSMATLNVLSGQTASTGGGAAGVGSKTRKRNIHGVLNTVSWGIMMPLGAIIARYLRVFQSADPAWFYLHVTCQTSAYVTGVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009981`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_009981

Location Chr02:137213588-137215091 (+)

Description Similar to At5g47530: Cytochrome b561 and DOMON domain-containing protein At5g47530

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47530`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release
`At4g17280`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release
`At5g35735`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release
`At3g25290`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release
`At4g12980`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009981 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0080022 primary root development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0000293 ferric-chelate reductase activity Molecular Function

GO:0009055 electron transfer activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G25290

ath:AT4G12980

ath:AT4G17280

ath:AT5G35735

ath:AT5G47530

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.751

Rank 1 · LXL04_009981 · OH-1004

Cytoplasm0.112

Rank 2 · LXL04_009981 · OH-1004

Lysosome / Vacuole0.111

Rank 3 · LXL04_009981 · OH-1004

Endoplasmic reticulum0.071

Rank 4 · LXL04_009981 · OH-1004

Golgi apparatus0.048

Rank 5 · LXL04_009981 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04526.19DUF56889-185 aa

PF03188.22Cytochrom_B561211-335 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009981	`PF04526.19`	DUF568	89	185	1.2e-26	94.1
LXL04_009981	`PF03188.22`	Cytochrom_B561	211	335	5.7e-06	27.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FGK4`	Arabidopsis thaliana	Cytochrome b561 and DOMON domain-containing protein At5g47530	63.144%	Swiss-Prot	strong database homology
`Q8VYH6`	Arabidopsis thaliana	Cytochrome b561 and DOMON domain-containing protein At4g17280	63.539%	Swiss-Prot	strong database homology
`Q9FKH6`	Arabidopsis thaliana	Cytochrome b561 and DOMON domain-containing protein At5g35735	52.186%	Swiss-Prot	strong database homology
`Q9LSE7`	Arabidopsis thaliana	Cytochrome b561 and DOMON domain-containing protein At3g25290	46.966%	Swiss-Prot	moderate database homology
`Q9SV71`	Arabidopsis thaliana	Cytochrome b561 and DOMON domain-containing protein At4g12980	48.476%	Swiss-Prot	moderate database homology

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