LXL04_009899 | RubberDandelionOmics

Gene overview

LXL04_009899

Reference: OH-1004 Chr: Chr02 Coordinates: 135651890-135655486 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2505 bp · LXL04_009899|LXL04_009899|OH1004|cDNA

ATGGGCTTGCAATTGGAGCCCTCCCCTTTACAATTAAGACACATTGTAATCTCGATGTGTTCTGAAGTATGCAATACTTTTGGAATTTCATTTGTTTTAGAAGCAGTATTAGAACTGCACACTAGGCTAGAGATGTTATCTGAGGAACTTAAAGGTGCCATAGTTTATTTGGATGCGGGATGTACAGAAAGTTTCAAGTTTCTTGGGGCATTCCCTGTTCTATTGGAGATGGGTGTACTTTCTGTTTGCAGCTTGGAGAC...

CDS

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2505 bp · LXL04_009899|LXL04_009899|OH1004|CDS

ATGGGCTTGCAATTGGAGCCCTCCCCTTTACAATTAAGACACATTGTAATCTCGATGTGTTCTGAAGTATGCAATACTTTTGGAATTTCATTTGTTTTAGAAGCAGTATTAGAACTGCACACTAGGCTAGAGATGTTATCTGAGGAACTTAAAGGTGCCATAGTTTATTTGGATGCGGGATGTACAGAAAGTTTCAAGTTTCTTGGGGCATTCCCTGTTCTATTGGAGATGGGTGTACTTTCTGTTTGCAGCTTGGAGAC...

Protein

Download Protein FASTA

834 aa · LXL04_009899|LXL04_009899|OH1004|PROTEIN

MGLQLEPSPLQLRHIVISMCSEVCNTFGISFVLEAVLELHTRLEMLSEELKGAIVYLDAGCTESFKFLGAFPVLLEMGVLSVCSLETMSSLDMVTDWNRKSDDLAKVVFFTCRLLSDSHRYILRCLTTLKRVSQCTIYISISEIGHSSYPDSPLGPDAYHEYQILLVQDYEELLKKNNQNPLHKNNNEIKEPSGFDDEGWLQLTPRESDTPKSQPFSSSKTLYDEGPKLIVDVNHFPLILCPFSPKFFVLPSEGSVSEAY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009899`
TK1151 ID	TkA03G481400
OH-1004 ID	LXL04_009899
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 98.387 / OH-1004 94.964 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009899

Location Chr02:135651890-135655486 (-)

Description Similar to MIP3: Sec1 family domain-containing protein MIP3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g42700`	Required for proper maturation of seed storage proteins.	MAG2 and three MAG2-INTERACTING PROTEINs form an ER-localized complex to facilitate storage protein transport in Arabidopsis thaliana.2013 · DOI: 10.1111/tpj.12347

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009899 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006624 vacuolar protein processing Biological Process

GO:0006886 intracellular protein transport Biological Process

GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0032527 protein exit from endoplasmic reticulum Biological Process

GO:0051604 protein maturation Biological Process

GO:0005773 vacuole Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

KEGG gene cross-reference

ath:AT2G42700

hsa:152579

mmu:212986

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.602

Rank 1 · LXL04_009899 · OH-1004

Nucleus0.244

Rank 2 · LXL04_009899 · OH-1004

Golgi apparatus0.159

Rank 3 · LXL04_009899 · OH-1004

Lysosome / Vacuole0.119

Rank 4 · LXL04_009899 · OH-1004

Cell membrane0.103

Rank 5 · LXL04_009899 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00995.29Sec1519-825 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009899	`PF00995.29`	Sec1	519	825	9.7e-11	42.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4IP69`	Arabidopsis thaliana	Sec1 family domain-containing protein MIP3	52.381%	Swiss-Prot	strong database homology

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