Gene Card
Gene overview
cDNA / CDS / Protein Sequences
790 bp · LXL04_009801|LXL04_009801|OH1004|cDNA
taaaaaaataaaataaaaaaaaatgagtTCAGACAGCAGAAGTCGAAGCCGGAGCAGGAGCCGGAGCCCCATGGATCGCAAGATCCGTACCCAACGACCCTCTTATCGTGATGCTCCTTACCGAAGGGACTCTCGTCGGGGTGGTTACagTCAAAGCAGTCTGTGTAAGAATTGCAAAAGACCAGGACATTATGCTAGAGAATGCCCGAATGTCGCCATCTGTCACAATTGTGGACTTCCAGGTCATATTGCATCAGAGT...
768 bp · LXL04_009801|LXL04_009801|OH1004|CDS
ATGAGTTCAGACAGCAGAAGTCGAAGCCGGAGCAGGAGCCGGAGCCCCATGGATCGCAAGATCCGTACCCAACGACCCTCTTATCGTGATGCTCCTTACCGAAGGGACTCTCGTCGGGGTGGTTACAGTCAAAGCAGTCTGTGTAAGAATTGCAAAAGACCAGGACATTATGCTAGAGAATGCCCGAATGTCGCCATCTGTCACAATTGTGGACTTCCAGGTCATATTGCATCAGAGTGTAGCACGAAGTCTTTATGCTG...
Protein
Download Protein FASTA255 aa · LXL04_009801|LXL04_009801|OH1004|PROTEIN
MSSDSRSRSRSRSRSPMDRKIRTQRPSYRDAPYRRDSRRGGYSQSSLCKNCKRPGHYARECPNVAICHNCGLPGHIASECSTKSLCWNCREPGHMAGNCPNEGICHTCGKTGHRARECSAPQMPPGDMRLCNNCYKQGHIAADCTNDKACKNCRKTGHLARDCLNDPVCNSCNVAGHVARDCPKGSSGDDRGGPRGGGDRGGGGYRDIVCRNCQQVGHMSRDCVALMICHNCGGRGHLAFECPSARFMDRFPRRY
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_009801 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_009801 |
|---|---|
| Location | Chr02:133861822-133862908 (+) |
| Description | Similar to HEXBP: DNA-binding protein HEXBP |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:2000767 positive regulation of cytoplasmic translation Biological Process GO:0000932 P-body Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0010494 cytoplasmic stress granule Cellular Component GO:0003677 DNA binding Molecular Function GO:0003697 single-stranded DNA binding Molecular Function GO:0003727 single-stranded RNA binding Molecular Function GO:0003729 mRNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0045182 translation regulator activity Molecular Function |
| KEGG gene cross-reference | sce:YNL255C These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13696.12zf-CCHC_247-63 aaPF00098.29zf-CCHC48-63 aaPF00098.29zf-CCHC67-81 aaPF00098.29zf-CCHC86-101 aaPF27939.1DUF8363103-146 aaPF00098.29zf-CCHC104-119 aaPF00098.29zf-CCHC149-163 aaPF00098.29zf-CCHC168-184 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_009801 | PF13696.12 | zf-CCHC_2 | 47 | 63 | 6.9e-12 | 45.6 |
| LXL04_009801 | PF00098.29 | zf-CCHC | 48 | 63 | 2.8e-50 | 166.9 |
| LXL04_009801 | PF00098.29 | zf-CCHC | 67 | 81 | 2.8e-50 | 166.9 |
| LXL04_009801 | PF00098.29 | zf-CCHC | 86 | 101 | 2.8e-50 | 166.9 |
| LXL04_009801 | PF27939.1 | DUF8363 | 103 | 146 | 4.9e-10 | 39.8 |
| LXL04_009801 | PF00098.29 | zf-CCHC | 104 | 119 | 2.8e-50 | 166.9 |
| LXL04_009801 | PF00098.29 | zf-CCHC | 149 | 163 | 2.8e-50 | 166.9 |
| LXL04_009801 | PF00098.29 | zf-CCHC | 168 | 184 | 2.8e-50 | 166.9 |
| LXL04_009801 | PF00098.29 | zf-CCHC | 209 | 223 | 2.8e-50 | 166.9 |
| LXL04_009801 | PF00098.29 | zf-CCHC | 228 | 244 | 2.8e-50 | 166.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.