LXL04_009696 | RubberDandelionOmics

Gene overview

LXL04_009696

Reference: OH-1004 Chr: Chr02 Coordinates: 131394093-131397875 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1137 bp · LXL04_009696|LXL04_009696|OH1004|cDNA

atgtcttgGGTGGTAGGTGGTGCCAAGAATGTCAAAAAAATTGTAGATCATCAAATGTCGTCtattcttttatttattttcgtGGGAACTGTTCTCACCATATTTCAAATTTCAAGTGCCATAGAGACATCAAATGGCGCACCACCCCCAATTTTCATATTTGGTGACTCAACAGCTGATGTTGGAACAAACTCTTTCTTGCCCATGACCAAAATACATGCCGATTTTCCTCACAATGGGATTGATTTTCTCAATTCAAG...

CDS

Download CDS FASTA

1137 bp · LXL04_009696|LXL04_009696|OH1004|CDS

ATGTCTTGGGTGGTAGGTGGTGCCAAGAATGTCAAAAAAATTGTAGATCATCAAATGTCGTCTATTCTTTTATTTATTTTCGTGGGAACTGTTCTCACCATATTTCAAATTTCAAGTGCCATAGAGACATCAAATGGCGCACCACCCCCAATTTTCATATTTGGTGACTCAACAGCTGATGTTGGAACAAACTCTTTCTTGCCCATGACCAAAATACATGCCGATTTTCCTCACAATGGGATTGATTTTCTCAATTCAAG...

Protein

Download Protein FASTA

378 aa · LXL04_009696|LXL04_009696|OH1004|PROTEIN

MSWVVGGAKNVKKIVDHQMSSILLFIFVGTVLTIFQISSAIETSNGAPPPIFIFGDSTADVGTNSFLPMTKIHADFPHNGIDFLNSRPTGRFSNGFNTADFLCKLMGRQRSPQPYLFLLKAGLTKRMFSGVNFASGASGLLDVTGKDLNILSMSDQIKQFETVCSNLTLVKGPEAAKDILAKSLIAISIGSNDIFGYFETQSTMEPLVFIDSLMTAYEYHINAIYELGARKFGIISVPPIGCCPSQRIHNTTGGCLEIEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009696`
TK1151 ID	TkA03G463340
OH-1004 ID	LXL04_009696
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 95.238 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_009696

Location Chr02:131394093-131397875 (-)

Description Similar to At5g55050: GDSL esterase/lipase At5g55050

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g55050`	GDSL esterase/lipase At5g55050.	No verified direct reference in this release
`At1g71250`	GDSL esterase/lipase At1g71250.	No verified direct reference in this release
`At2g23540`	GDSL esterase/lipase At2g23540.	No verified direct reference in this release
`At5g08460`	GDSL esterase/lipase At5g08460.	No verified direct reference in this release
`At4g28780`	GDSL esterase/lipase At4g28780.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009696 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G71250

ath:AT2G23540

ath:AT4G28780

ath:AT5G08460

ath:AT5G55050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.377

Rank 1 · LXL04_009696 · OH-1004

Lysosome / Vacuole0.158

Rank 2 · LXL04_009696 · OH-1004

Cell membrane0.134

Rank 3 · LXL04_009696 · OH-1004

Endoplasmic reticulum0.127

Rank 4 · LXL04_009696 · OH-1004

Cytoplasm0.105

Rank 5 · LXL04_009696 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL51-357 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009696	`PF00657.29`	Lipase_GDSL	51	357	3.2e-28	100.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIA1`	Arabidopsis thaliana	GDSL esterase/lipase At5g55050	35.088%	Swiss-Prot	moderate database homology
`Q9FVV1`	Arabidopsis thaliana	GDSL esterase/lipase At1g71250	33.867%	Swiss-Prot	moderate database homology
`O80470`	Arabidopsis thaliana	GDSL esterase/lipase At2g23540	36.686%	Swiss-Prot	moderate database homology
`Q9FNP2`	Arabidopsis thaliana	GDSL esterase/lipase At5g08460	33.158%	Swiss-Prot	moderate database homology
`Q9SVU5`	Arabidopsis thaliana	GDSL esterase/lipase At4g28780	32.162%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card