Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1206 bp · LXL04_009660|LXL04_009660|OH1004|cDNA
ATGTCAACACACGGTGACGATCTCGATCTTCTTCTTTCCCTTCAAGACAGGGTGCTAGAAACCCCTCCGTCATCACCGTCGCCCCATTCACCTGGATATCTTTCTGATGATGGATCCACGAGGCACAGGGGACATGGGGACATGTCTGCTTTTAGAACTGCTGTTGAGGATTGTCTAGACTATGAACCTGAACCCTCCAAGAAACCATTAAAATCAAAACATTCAAAAAGCTCAAGTAATGTTGAGGTTGAAACATTCTC...
1206 bp · LXL04_009660|LXL04_009660|OH1004|CDS
ATGTCAACACACGGTGACGATCTCGATCTTCTTCTTTCCCTTCAAGACAGGGTGCTAGAAACCCCTCCGTCATCACCGTCGCCCCATTCACCTGGATATCTTTCTGATGATGGATCCACGAGGCACAGGGGACATGGGGACATGTCTGCTTTTAGAACTGCTGTTGAGGATTGTCTAGACTATGAACCTGAACCCTCCAAGAAACCATTAAAATCAAAACATTCAAAAAGCTCAAGTAATGTTGAGGTTGAAACATTCTC...
Protein
Download Protein FASTA401 aa · LXL04_009660|LXL04_009660|OH1004|PROTEIN
MSTHGDDLDLLLSLQDRVLETPPSSPSPHSPGYLSDDGSTRHRGHGDMSAFRTAVEDCLDYEPEPSKKPLKSKHSKSSSNVEVETFSGLKIRNMLVSKTELSDRLADIRFVRLTAIKTLLSGDTLSGCWATIGVLCEKGQIRTSSTGKPYSIWTFGCLDEKTVSVFLFGNTYQKNSKEEVGTIFALFNCGVRKDAKSKSGFTLTVFSAPQVLKLGTSAEFGQCKTCNVVINKRNGEYCKYHKKNASEKYSTKRMEFMGGN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_009660 |
|---|---|
| TK1151 ID | TkA03G460760 |
| OH-1004 ID | LXL04_009660 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_009660 |
|---|---|
| Location | Chr02:130856086-130858875 (-) |
| Description | Similar to Mcm10: Protein MCM10 homolog |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006270 DNA replication initiation Biological Process GO:0006974 DNA damage response Biological Process GO:0008283 cell population proliferation Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component GO:0043596 nuclear replication fork Cellular Component GO:0003688 DNA replication origin binding Molecular Function GO:0003690 double-stranded DNA binding Molecular Function GO:0003697 single-stranded DNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0019899 enzyme binding Molecular Function |
| KEGG gene cross-reference | dre:553396 hsa:55388 mmu:70024 xla:398196 xtr:549663 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF22379.3OB_MCM1086-212 aaPF09329.17zf-primase215-253 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_009660 | PF22379.3 | OB_MCM10 | 86 | 212 | 1.9e-49 | 167.5 |
| LXL04_009660 | PF09329.17 | zf-primase | 215 | 253 | 3.8e-08 | 33.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.