LXL04_009625 | RubberDandelionOmics

Gene overview

LXL04_009625

Reference: OH-1004 Chr: Chr02 Coordinates: 129888755-129889147 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

393 bp · LXL04_009625|LXL04_009625|OH1004|cDNA

ATGGCTCCCACCAGACACGTTCTTCCAGGCCACGGGTTAGTCTTTCTCTTCACCCCAGTCACCGGGATTCGGAACACGAACGCAGCTCAGAATCTGGGTCTGTTTAGTCGAGCGGTTGACGGGAATTCAAGCAATCATGTGTTCGGTGTTGAGTTTGATGTGTTCGCGAATGAAGAGTTTGGGGATATTAATGATAATCATGTTGGGATCGATGTCAATTCTTTAACATCTGTTAATTCAACGGAAGCTGGGTATTTTCG...

CDS

Download CDS FASTA

393 bp · LXL04_009625|LXL04_009625|OH1004|CDS

ATGGCTCCCACCAGACACGTTCTTCCAGGCCACGGGTTAGTCTTTCTCTTCACCCCAGTCACCGGGATTCGGAACACGAACGCAGCTCAGAATCTGGGTCTGTTTAGTCGAGCGGTTGACGGGAATTCAAGCAATCATGTGTTCGGTGTTGAGTTTGATGTGTTCGCGAATGAAGAGTTTGGGGATATTAATGATAATCATGTTGGGATCGATGTCAATTCTTTAACATCTGTTAATTCAACGGAAGCTGGGTATTTTCG...

Protein

Download Protein FASTA

130 aa · LXL04_009625|LXL04_009625|OH1004|PROTEIN

MAPTRHVLPGHGLVFLFTPVTGIRNTNAAQNLGLFSRAVDGNSSNHVFGVEFDVFANEEFGDINDNHVGIDVNSLTSVNSTEAGYFRDQDEGFRRLQLNNGRINSASELELLNFVNLFLVFLIKPIAECS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009625`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_009625

Location Chr02:129888755-129889147 (+)

Description Similar to LECRK71: L-type lectin-domain containing receptor kinase VII.1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g04960`	L-type lectin-domain containing receptor kinase VII.1.	No verified direct reference in this release
`At4g28350`	Probable L-type lectin-domain containing receptor kinase VII.2.	No verified direct reference in this release
`At4g29050`	L-type lectin-domain containing receptor kinase V.9.	No verified direct reference in this release
`At2g43700`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae.	No verified direct reference in this release
`At2g43690`	Probable L-type lectin-domain containing receptor kinase V.3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009625 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004675 transmembrane receptor protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G43690

ath:AT2G43700

ath:AT4G04960

ath:AT4G28350

ath:AT4G29050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.307

Rank 1 · LXL04_009625 · OH-1004

Mitochondrion0.236

Rank 2 · LXL04_009625 · OH-1004

Nucleus0.171

Rank 3 · LXL04_009625 · OH-1004

Plastid0.109

Rank 4 · LXL04_009625 · OH-1004

Extracellular0.097

Rank 5 · LXL04_009625 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00139.27Lectin_legB8-105 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009625	`PF00139.27`	Lectin_legB	8	105	7.3e-25	88.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9S9U1`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase VII.1	61.765%	Swiss-Prot	strong database homology
`O49445`	Arabidopsis thaliana	Probable L-type lectin-domain containing receptor kinase VII.2	51.961%	Swiss-Prot	strong database homology
`Q9SZD5`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase V.9	45.361%	Swiss-Prot	moderate database homology
`O22833`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase V.4	45.631%	Swiss-Prot	moderate database homology
`O22834`	Arabidopsis thaliana	Probable L-type lectin-domain containing receptor kinase V.3	47.312%	Swiss-Prot	moderate database homology

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