LXL04_009321 | RubberDandelionOmics

Gene overview

LXL04_009321

Reference: OH-1004 Chr: Chr02 Coordinates: 122813291-122815271 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1368 bp · LXL04_009321|LXL04_009321|OH1004|cDNA

ATGTATGGAGTACATCCGCCAAAGAAATCCGATGAGGTCGTCGGCGATGGAAAGAGGGAGGTGATCCGGACGTACCAGACTTGGAAAGGCAGCAACGTAAGTTCATTGATTTTGTTTTGTAATTTAGGGTTTGTTTTTTGGGATATGATTGTGATTTGGATTCAAGATATTTTTCCTTGGAGGAAGATTGATATTCGGACCAGATGTGCGATCAGTATTTCTATCAATGTTCCTAATAATTGCTCCAGTAGCAGTCTTCT...

CDS

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1368 bp · LXL04_009321|LXL04_009321|OH1004|CDS

ATGTATGGAGTACATCCGCCAAAGAAATCCGATGAGGTCGTCGGCGATGGAAAGAGGGAGGTGATCCGGACGTACCAGACTTGGAAAGGCAGCAACGTAAGTTCATTGATTTTGTTTTGTAATTTAGGGTTTGTTTTTTGGGATATGATTGTGATTTGGATTCAAGATATTTTTCCTTGGAGGAAGATTGATATTCGGACCAGATGTGCGATCAGTATTTCTATCAATGTTCCTAATAATTGCTCCAGTAGCAGTCTTCT...

Protein

Download Protein FASTA

455 aa · LXL04_009321|LXL04_009321|OH1004|PROTEIN

MYGVHPPKKSDEVVGDGKREVIRTYQTWKGSNVSSLILFCNLGFVFWDMIVIWIQDIFPWRKIDIRTRCAISISINVPNNCSSSSLLCICRPKVARSLPPSSRDTNHGHTDCIHNLRKFSHLPNSLSSFYPHSILVSNPKCNINLQSVSLLLSTSGRDPGIIPRNTHPPEPETMDESLEVGSSQTPQLRLPRIKEVTVNGMTVKVKYCDTCMLYRPPRCSHCSICDNCVERFDHHCPWVGQCIGRRNYRFFFMFVSSATL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009321`
TK1151 ID	TkA03G418250
OH-1004 ID	LXL04_009321
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.800
Protein coverage (%)	TK1151 92.308 / OH-1004 36.923 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009321

Location Chr02:122813291-122815271 (-)

Description Similar to PAT07: Probable protein S-acyltransferase 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26935`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At5g41060`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At3g48760`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At3g56930`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At4g24630`	S-acyltransferase involved in protein lipid modification.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_009321 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006612 protein targeting to membrane Biological Process

GO:0048767 root hair elongation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0030140 trans-Golgi network transport vesicle Cellular Component

GO:0035618 root hair Cellular Component

GO:0019706 protein-cysteine S-palmitoyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G26935

ath:AT3G48760

ath:AT3G56930

ath:AT4G24630

ath:AT5G41060

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.342

Rank 1 · LXL04_009321 · OH-1004

Golgi apparatus0.249

Rank 2 · LXL04_009321 · OH-1004

Cell membrane0.177

Rank 3 · LXL04_009321 · OH-1004

Lysosome / Vacuole0.172

Rank 4 · LXL04_009321 · OH-1004

Cytoplasm0.163

Rank 5 · LXL04_009321 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01529.26DHHC206-330 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009321	`PF01529.26`	DHHC	206	330	3.9e-38	131.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WQK2`	Arabidopsis thaliana	Probable protein S-acyltransferase 7	51.910%	Swiss-Prot	strong database homology
`Q9FLM3`	Arabidopsis thaliana	Probable protein S-acyltransferase 6	50.459%	Swiss-Prot	strong database homology
`Q9M306`	Arabidopsis thaliana	Probable protein S-acyltransferase 5	66.260%	Swiss-Prot	moderate database homology
`Q9M1K5`	Arabidopsis thaliana	Probable protein S-acyltransferase 4	56.134%	Swiss-Prot	moderate database homology
`Q9SB58`	Arabidopsis thaliana	Protein S-acyltransferase 8	62.054%	Swiss-Prot	weak database homology

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