Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1113 bp · LXL04_009223|LXL04_009223|OH1004|cDNA
ATGGATTCAGTACCTTCGTTGTCACCAACAAACCAAGAGAAACAGGATTTGGGGTGGAAAGAATGGCTGAAAGGATGGTACCGTTTAATCCTCGAGACATTCTTTGAAAAATACTGGTCAAGAAATCTACCAAACCCATTACCACTTCCTCCCCTCACCGGAACCACCGCGATTGTCACAGGCTCCACCAGCGGAATCGGACTCCACACCGCCAGACAACTAGCGGAATCAGGAGCACACGTAGTCATGGCAGTTCGTAA...
1113 bp · LXL04_009223|LXL04_009223|OH1004|CDS
ATGGATTCAGTACCTTCGTTGTCACCAACAAACCAAGAGAAACAGGATTTGGGGTGGAAAGAATGGCTGAAAGGATGGTACCGTTTAATCCTCGAGACATTCTTTGAAAAATACTGGTCAAGAAATCTACCAAACCCATTACCACTTCCTCCCCTCACCGGAACCACCGCGATTGTCACAGGCTCCACCAGCGGAATCGGACTCCACACCGCCAGACAACTAGCGGAATCAGGAGCACACGTAGTCATGGCAGTTCGTAA...
Protein
Download Protein FASTA370 aa · LXL04_009223|LXL04_009223|OH1004|PROTEIN
MDSVPSLSPTNQEKQDLGWKEWLKGWYRLILETFFEKYWSRNLPNPLPLPPLTGTTAIVTGSTSGIGLHTARQLAESGAHVVMAVRNTESAHKLIQTWNSDNKSLDIEVIELNLSSLESVANFAKNWNSRNKPLNLLINNAGVFSMGKSKMWSTDGYETHMQVNFLAPALLSLLLLPSLKSGSPSRIVNVNSLMHGIGFVDLRDLNFDKGISTFTSLKAYSRSKLAQVMFNNVLHGILPKDLGINTVCVDPGSVRTNVAR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_009223 |
|---|---|
| TK1151 ID | TkA03G410800 |
| OH-1004 ID | LXL04_009223 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_009223 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:120855576-120856688 (-) | |||||||||
| Description | Similar to FEY: Dehydrogenase/reductase SDR family member FEY | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0001523 retinoid metabolic process Biological Process GO:0010073 meristem maintenance Biological Process GO:0015031 protein transport Biological Process GO:0042572 retinol metabolic process Biological Process GO:0042574 retinal metabolic process Biological Process GO:0045494 photoreceptor cell maintenance Biological Process GO:0110095 cellular detoxification of aldehyde Biological Process GO:2000024 regulation of leaf development Biological Process GO:0005634 nucleus Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005829 cytosol Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT4G23430 ath:AT4G27760 hsa:145226 mmu:17252 mmu:77974 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00106.32adh_short56-194 aaPF08659.17KR56-162 aaPF13561.13adh_short_C263-198 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_009223 | PF00106.32 | adh_short | 56 | 194 | 3.8e-30 | 105.6 |
| LXL04_009223 | PF08659.17 | KR | 56 | 162 | 1.5e-08 | 35.5 |
| LXL04_009223 | PF13561.13 | adh_short_C2 | 63 | 198 | 2e-15 | 57.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.