LXL04_009179 | RubberDandelionOmics

Gene overview

LXL04_009179

Reference: OH-1004 Chr: Chr02 Coordinates: 119647756-119650628 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2298 bp · LXL04_009179|LXL04_009179|OH1004|cDNA

ATGAGTTCGGTGTTGCTATCAGATCTGGCAACGGAAATTATTATTCCGGTATGTGCTGTGATTGGTATCGTTTTTTCTCTGATCCAATGGGCGTTGGTGTCAAGAGTAAAGCTCACTCCGGACCGTAACGGTTCCCCGGCAAACAGCAACAAGAATGGGTACAATGATTCCTTAATCGAAGAAGAGGAGGGCGTTAACGAACATAACGTCGTCGCAAAATGCGCTGAGATTCAGAATGCCATCTCTGAAGGAGCAACATC...

CDS

Download CDS FASTA

2298 bp · LXL04_009179|LXL04_009179|OH1004|CDS

ATGAGTTCGGTGTTGCTATCAGATCTGGCAACGGAAATTATTATTCCGGTATGTGCTGTGATTGGTATCGTTTTTTCTCTGATCCAATGGGCGTTGGTGTCAAGAGTAAAGCTCACTCCGGACCGTAACGGTTCCCCGGCAAACAGCAACAAGAATGGGTACAATGATTCCTTAATCGAAGAAGAGGAGGGCGTTAACGAACATAACGTCGTCGCAAAATGCGCTGAGATTCAGAATGCCATCTCTGAAGGAGCAACATC...

Protein

Download Protein FASTA

765 aa · LXL04_009179|LXL04_009179|OH1004|PROTEIN

MSSVLLSDLATEIIIPVCAVIGIVFSLIQWALVSRVKLTPDRNGSPANSNKNGYNDSLIEEEEGVNEHNVVAKCAEIQNAISEGATSFLLTEYQYVGIFMVVFAILIFLFLGSVEGFSTKSKQCTYNIHSMCKPAIATALFSTIAFVLGAITSVLSGFLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYITINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009179`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009179

Location Chr02:119647756-119650628 (+)

Description Similar to Pyrophosphate-energized vacuolar membrane proton pump

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g15690`	May contribute to the H⁺ electrochemical gradient across the tonoplast from the cytosol to the vacuolar lumen.	Arabidopsis H+-PPase AVP1 regulates auxin-mediated organ development.2005 · DOI: 10.1126/science.1115711

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_009179 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005985 sucrose metabolic process Biological Process

GO:0006814 sodium ion transport Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009926 auxin polar transport Biological Process

GO:0010248 establishment or maintenance of transmembrane electrochemical gradient Biological Process

GO:0010581 regulation of starch biosynthetic process Biological Process

GO:0048366 leaf development Biological Process

GO:0052546 cell wall pectin metabolic process Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

KEGG gene cross-reference

ath:AT1G15690

lic:LIC_12285

lil:LA_1471

vra:106768298

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.383

Rank 1 · LXL04_009179 · OH-1004

Cell membrane0.231

Rank 2 · LXL04_009179 · OH-1004

Endoplasmic reticulum0.220

Rank 3 · LXL04_009179 · OH-1004

Cytoplasm0.151

Rank 4 · LXL04_009179 · OH-1004

Golgi apparatus0.120

Rank 5 · LXL04_009179 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03030.22H_PPase59-751 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009179	`PF03030.22`	H_PPase	59	751	8.6e-257	854.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P31414`	Arabidopsis thaliana	Pyrophosphate-energized vacuolar membrane proton pump 1	89.122%	Swiss-Prot	strong database homology

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