LXL04_009130 | RubberDandelionOmics

Gene overview

LXL04_009130

Reference: OH-1004 Chr: Chr02 Coordinates: 118447864-118450351 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2115 bp · LXL04_009130|LXL04_009130|OH1004|cDNA

ATGGCGCCGAAAGGGGAGTTTTTCCGGTGGTGGGGTAAGGATACACGGAAGGGAACTCCGGTGATAGTAACAATGGAGAATGTTAACTATTCCGTAGTGGAAATCGACGGCCCTGATTCCGCATTTCGGCCGATAGACAAAGATAGAGTGAAAAACGCTAAACAGTTCACATGGGTTTTGATTCTGAAAGCGAATCGAGCTGTCGGTTGTGTTGCTTGGTTAGGTCATATCCTGTGGGCATTACTTGGCGCCATTAAGAA...

CDS

Download CDS FASTA

2115 bp · LXL04_009130|LXL04_009130|OH1004|CDS

ATGGCGCCGAAAGGGGAGTTTTTCCGGTGGTGGGGTAAGGATACACGGAAGGGAACTCCGGTGATAGTAACAATGGAGAATGTTAACTATTCCGTAGTGGAAATCGACGGCCCTGATTCCGCATTTCGGCCGATAGACAAAGATAGAGTGAAAAACGCTAAACAGTTCACATGGGTTTTGATTCTGAAAGCGAATCGAGCTGTCGGTTGTGTTGCTTGGTTAGGTCATATCCTGTGGGCATTACTTGGCGCCATTAAGAA...

Protein

Download Protein FASTA

704 aa · LXL04_009130|LXL04_009130|OH1004|PROTEIN

MAPKGEFFRWWGKDTRKGTPVIVTMENVNYSVVEIDGPDSAFRPIDKDRVKNAKQFTWVLILKANRAVGCVAWLGHILWALLGAIKKRLFFRNGVAMENENEKSGKGKFLFGFILSLLLTAMAFLAFEVIAHYMRWPYFQEHNLHIPQTLEIRGWLHSIYVSWLGFRADYIAPLILSFSNFCVVLFLIQSLDRLILCLGCFWIKFKNIKPRINGDPFNSNDSEPSKYIYPMVLVQIPMCNEREVYEQSISAVCQLDWPRD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009130`
TK1151 ID	TkA03G400730
OH-1004 ID	LXL04_009130
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_009130

Location Chr02:118447864-118450351 (+)

Description Similar to CSLC5: Probable xyloglucan glycosyltransferase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g31590`	Probable beta-1,4-glucan synthase rather involved in the synthesis of the xyloglucan backbone than cellulose.	No verified direct reference in this release
`At2g24630`	Probable beta-1,4-glucan synthase rather involved in the synthesis of the xyloglucan backbone than cellulose.	No verified direct reference in this release
`At3g28180`	Beta-1,4-glucan synthase rather involved in the synthesis of the xyloglucan backbone than cellulose.	A gene from the cellulose synthase-like C family encodes a beta-1,4 glucan synthase.2007 · DOI: 10.1073/pnas.0703133104 Protein-protein interactions among xyloglucan-synthesizing enzymes and formation of Golgi-localized multiprotein complexes.2015 · DOI: 10.1093/pcp/pcu161

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0253800`	Probable beta-1,4-glucan synthase rather involved in the synthesis of the xyloglucan backbone than cellulose.	No verified direct reference in this release
`Os09g0428000`	Probable beta-1,4-glucan synthase rather involved in the synthesis of the xyloglucan backbone than cellulose.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009130 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0048868 pollen tube development Biological Process

GO:0071555 cell wall organization Biological Process

GO:0099402 plant organ development Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

KEGG gene cross-reference

ath:AT2G24630

ath:AT3G28180

ath:AT4G31590

dosa:Os08g0253800

dosa:Os09g0428000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.331

Rank 1 · LXL04_009130 · OH-1004

Golgi apparatus0.326

Rank 2 · LXL04_009130 · OH-1004

Cell membrane0.169

Rank 3 · LXL04_009130 · OH-1004

Cytoplasm0.127

Rank 4 · LXL04_009130 · OH-1004

Nucleus0.100

Rank 5 · LXL04_009130 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13641.13Glyco_tranf_2_3230-467 aa

PF00535.33Glycos_transf_2235-382 aa

PF13632.13Glyco_trans_2_3324-537 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009130	`PF13641.13`	Glyco_tranf_2_3	230	467	1.7e-10	41.7
LXL04_009130	`PF00535.33`	Glycos_transf_2	235	382	1.2e-07	32.5
LXL04_009130	`PF13632.13`	Glyco_trans_2_3	324	537	8.9e-20	72.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SB75`	Arabidopsis thaliana	Probable xyloglucan glycosyltransferase 5	75.779%	Swiss-Prot	strong database homology
`Q9SJA2`	Arabidopsis thaliana	Probable xyloglucan glycosyltransferase 8	73.191%	Swiss-Prot	strong database homology
`Q9LJP4`	Arabidopsis thaliana	Xyloglucan glycosyltransferase 4	67.286%	Swiss-Prot	strong database homology
`Q7PC69`	Oryza sativa subsp. japonica	Probable xyloglucan glycosyltransferase 3	65.430%	Swiss-Prot	strong database homology
`Q69L19`	Oryza sativa subsp. japonica	Probable xyloglucan glycosyltransferase 2	68.867%	Swiss-Prot	strong database homology

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