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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_009120
Reference: OH-1004 Chr: Chr02 Coordinates: 118156052-118159192 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3141 bp · LXL04_009120|LXL04_009120|OH1004|cDNA

atgCTCCCAAAACccctcttcttcctcttcttcttccatctGGGTTTTGTTCGATTGTTGATTACAGACGCCGACGCCGCTTGTTCCGGTTCTGATCGAGATTCTCTGCTGTTATTCGCCGCTAACTTTCCGACCCTTAACTGGACTGCCGACGTCGATTGCTGTTCATGGGAAGGAATCGATTGTGATGATGCTGGAGATCGGGTTGTGGAGTTGTCGTTACCTGATAGAGGACTTCGTGGTGGTATCCCTTCTTCTCT...

CDS

Download CDS FASTA

3141 bp · LXL04_009120|LXL04_009120|OH1004|CDS

ATGCTCCCAAAACCCCTCTTCTTCCTCTTCTTCTTCCATCTGGGTTTTGTTCGATTGTTGATTACAGACGCCGACGCCGCTTGTTCCGGTTCTGATCGAGATTCTCTGCTGTTATTCGCCGCTAACTTTCCGACCCTTAACTGGACTGCCGACGTCGATTGCTGTTCATGGGAAGGAATCGATTGTGATGATGCTGGAGATCGGGTTGTGGAGTTGTCGTTACCTGATAGAGGACTTCGTGGTGGTATCCCTTCTTCTCT...

Protein

Download Protein FASTA

1046 aa · LXL04_009120|LXL04_009120|OH1004|PROTEIN

MLPKPLFFLFFFHLGFVRLLITDADAACSGSDRDSLLLFAANFPTLNWTADVDCCSWEGIDCDDAGDRVVELSLPDRGLRGGIPSSLQSVTTLSLLNLSSNFLSGPLPDGLFASMNNLHTIDLSYNRLTGRLPDTLPDTLQSLNCSSNHFNGTIQDTFFRSTPNLIAFNISNNSFAGVIPRSICDSSPGLVILDFSLNDFIGIIPTGFGACSNLQVLSMGFNKLTGTIPIDIDGARSLQVLSFPGNNLTGEMDESITNLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_009120
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_009120
LocationChr02:118156052-118159192 (-)
DescriptionSimilar to PSY1R: Tyrosine-sulfated glycopeptide receptor 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g72300 Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity.
Tyrosine-sulfated glycopeptide involved in cellular proliferation and expansion in Arabidopsis.2007 · DOI: 10.1073/pnas.0706403104
The tyrosine-sulfated peptide receptors PSKR1 and PSY1R modify the immunity of Arabidopsis to biotrophic and necrotrophic pathogens in an antagonistic manner.2013 · DOI: 10.1111/tpj.12050
Receptor kinase-mediated control of primary active proton pumping at the plasma membrane.2014 · DOI: 10.1111/tpj.12680
At5g53890 Phytosulfokine receptor with a serine/threonine-protein kinase activity. No verified direct reference in this release
At2g02220 Phytosulfokine receptor with both a serine/threonine-protein kinase activity and a guanylate cyclase activity.
Disruption and overexpression of Arabidopsis phytosulfokine receptor gene affects cellular longevity and potential for growth.2006 · DOI: 10.1104/pp.106.081109
The phytosulfokine (PSK) receptor is capable of guanylate cyclase activity and enabling cyclic GMP-dependent signaling in plants.2011 · DOI: 10.1074/jbc.m110.168823
The tyrosine-sulfated peptide receptors PSKR1 and PSY1R modify the immunity of Arabidopsis to biotrophic and necrotrophic pathogens in an antagonistic manner.2013 · DOI: 10.1111/tpj.12050
At1g17240 Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Functional analyses of the CLAVATA2-like proteins and their domains that contribute to CLAVATA2 specificity.2010 · DOI: 10.1104/pp.109.148197

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009120 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009617 response to bacterium Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0010073 meristem maintenance Biological Process
GO:0031347 regulation of defense response Biological Process
GO:0045087 innate immune response Biological Process
GO:0045851 pH reduction Biological Process
GO:0051707 response to other organism Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
KEGG gene cross-reference
ath:AT1G17240
ath:AT1G72300
ath:AT2G02220
ath:AT5G53890
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.887
Rank 1 · LXL04_009120 · OH-1004
Endoplasmic reticulum0.080
Rank 2 · LXL04_009120 · OH-1004
Cytoplasm0.059
Rank 3 · LXL04_009120 · OH-1004
Nucleus0.039
Rank 4 · LXL04_009120 · OH-1004
Lysosome / Vacuole0.023
Rank 5 · LXL04_009120 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855.13LRR_892-150 aa
PF13855.13LRR_8188-248 aa
PF23598.2LRR_14236-494 aa
PF13855.13LRR_8448-492 aa
PF12799.14LRR_4456-493 aa
PF13855.13LRR_8457-506 aa
PF13855.13LRR_8546-601 aa
PF23598.2LRR_14548-622 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_009120PF13855.13LRR_8921503.2e-37126.8
LXL04_009120PF13855.13LRR_81882483.2e-37126.8
LXL04_009120PF23598.2LRR_142364941.2e-2074.4
LXL04_009120PF13855.13LRR_84484923.2e-37126.8
LXL04_009120PF12799.14LRR_44564937e-2484.0
LXL04_009120PF13855.13LRR_84575063.2e-37126.8
LXL04_009120PF13855.13LRR_85466013.2e-37126.8
LXL04_009120PF23598.2LRR_145486221.2e-2074.4
LXL04_009120PF13855.13LRR_85686253.2e-37126.8
LXL04_009120PF00069.32Pkinase76510329.8e-38130.8
LXL04_009120PF07714.24PK_Tyr_Ser-Thr76710331.9e-39136.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C7S5Arabidopsis thalianaTyrosine-sulfated glycopeptide receptor 155.650%Swiss-Protstrong database homology
Q9FN37Arabidopsis thalianaPhytosulfokine receptor 245.825%Swiss-Protmoderate database homology
Q9ZVR7Arabidopsis thalianaPhytosulfokine receptor 143.945%Swiss-Protmoderate database homology
Q9SHI3Arabidopsis thalianaReceptor-like protein 249.356%Swiss-Protmoderate database homology

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