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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_008901
Reference: OH-1004 Chr: Chr02 Coordinates: 111636200-111637525 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1326 bp · LXL04_008901|LXL04_008901|OH1004|cDNA

ATGGTTCCTTCAAAAGATGCATCTCATGTTGTAAACCAAGTCTTGGCCGCCATCATTCAAAACCATCCATTTCATGTGCATCTTGTCAACTCATCCTCTTTAACCCATCAGTTTTCAAATCCACCATGGGCATATGAGCTCGTCACCAACGTCCTCAGATCCGTACCCAGATACTTCTTCCAATCCACAAGATCCATCGGGCGTCAAAACACCTCCAGACACCGAGCTCCTCTCAAACAAAGAAACCTTCATCAAGAATC...

CDS

Download CDS FASTA

1326 bp · LXL04_008901|LXL04_008901|OH1004|CDS

ATGGTTCCTTCAAAAGATGCATCTCATGTTGTAAACCAAGTCTTGGCCGCCATCATTCAAAACCATCCATTTCATGTGCATCTTGTCAACTCATCCTCTTTAACCCATCAGTTTTCAAATCCACCATGGGCATATGAGCTCGTCACCAACGTCCTCAGATCCGTACCCAGATACTTCTTCCAATCCACAAGATCCATCGGGCGTCAAAACACCTCCAGACACCGAGCTCCTCTCAAACAAAGAAACCTTCATCAAGAATC...

Protein

Download Protein FASTA

441 aa · LXL04_008901|LXL04_008901|OH1004|PROTEIN

MVPSKDASHVVNQVLAAIIQNHPFHVHLVNSSSLTHQFSNPPWAYELVTNVLRSVPRYFFQSTRSIGRQNTSRHRAPLKQRNLHQESIKIRKDILLLGPAAYRDPQKVKLGLNKALEFYYWVESQFGFNHNEMTCREMAIVLARGNRLKDLWNFLKDMSRRTTGNLVTTTTMTCLIKVLGEEGLANEALAAFHRMKQFHCKPDVFSYNTTINALCKVNNFKMAKFLFEQMELPGFRCPPDTFTYTILISSYCKLSLQTSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_008901
TK1151 IDTkA03G314860
OH-1004 IDLXL04_008901
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_008901
LocationChr02:111636200-111637525 (-)
DescriptionSimilar to At1g77405: Pentatricopeptide repeat-containing protein At1g77405
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g77405 Pentatricopeptide repeat-containing protein At1g77405. No verified direct reference in this release
At3g22470 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial. No verified direct reference in this release
At3g53700 May be involved in female gametophyte development. No verified direct reference in this release
At2g06000 Pentatricopeptide repeat-containing protein At2g06000. No verified direct reference in this release
At1g12775 Pentatricopeptide repeat-containing protein At1g12775, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008901 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G77405
ath:AT3G22470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.702
Rank 1 · LXL04_008901 · OH-1004
Plastid0.176
Rank 2 · LXL04_008901 · OH-1004
Nucleus0.066
Rank 3 · LXL04_008901 · OH-1004
Cytoplasm0.030
Rank 4 · LXL04_008901 · OH-1004
Cell membrane0.011
Rank 5 · LXL04_008901 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2169-216 aa
PF13812.13PPR_3171-214 aa
PF12854.14PPR_1199-231 aa
PF13041.13PPR_2202-253 aa
PF01535.27PPR205-231 aa
PF12854.14PPR_1237-253 aa
PF13041.13PPR_2266-299 aa
PF13812.13PPR_3275-332 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_008901PF13041.13PPR_21692162.2e-59198.1
LXL04_008901PF13812.13PPR_31712146.3e-1865.3
LXL04_008901PF12854.14PPR_11992313.3e-45152.2
LXL04_008901PF13041.13PPR_22022532.2e-59198.1
LXL04_008901PF01535.27PPR2052317.4e-35117.5
LXL04_008901PF12854.14PPR_12372533.3e-45152.2
LXL04_008901PF13041.13PPR_22662992.2e-59198.1
LXL04_008901PF13812.13PPR_32753326.3e-1865.3
LXL04_008901PF12854.14PPR_12813133.3e-45152.2
LXL04_008901PF13041.13PPR_22853332.2e-59198.1
LXL04_008901PF01535.27PPR2883187.4e-35117.5
LXL04_008901PF17177.11PPR_long2883968.2e-0935.9
LXL04_008901PF12854.14PPR_13173493.3e-45152.2
LXL04_008901PF13041.13PPR_23203502.2e-59198.1
LXL04_008901PF01535.27PPR3233517.4e-35117.5
LXL04_008901PF13041.13PPR_23583972.2e-59198.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q1PFC5Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g7740559.132%Swiss-Protstrong database homology
Q6NQ83Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g22470, mitochondrial30.693%Swiss-Protmoderate database homology
Q9LFF1Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g53700, chloroplastic30.851%Swiss-Protmoderate database homology
Q9ZUE9Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g0600030.640%Swiss-Protmoderate database homology
Q9LPX2Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g12775, mitochondrial28.846%Swiss-Protweak database homology

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