LXL04_008859 | RubberDandelionOmics

Gene overview

LXL04_008859

Reference: OH-1004 Chr: Chr02 Coordinates: 110635870-110637926 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1446 bp · LXL04_008859|LXL04_008859|OH1004|cDNA

ATGGCTACTTATTATCCTACTTCAAGCAATCATCAAAGAGATGTGTTTCAAAATTCATACGATTCATATCAAGAATCACCATGTCCACCTGTTGATATCATGTACCAAAACCAAACAACCACCGACACCTCTTTCTTGGAGCTTTTATCCAATAACATGCAACCAAATCCCCAAATCCTTTCACAAGTCAAAGATCACAACAACTCTTCAGATGATGAAAGAAACTTGCAGTATCAAGAATTATCACTAAGCCTAGGAAT...

CDS

Download CDS FASTA

1446 bp · LXL04_008859|LXL04_008859|OH1004|CDS

ATGGCTACTTATTATCCTACTTCAAGCAATCATCAAAGAGATGTGTTTCAAAATTCATACGATTCATATCAAGAATCACCATGTCCACCTGTTGATATCATGTACCAAAACCAAACAACCACCGACACCTCTTTCTTGGAGCTTTTATCCAATAACATGCAACCAAATCCCCAAATCCTTTCACAAGTCAAAGATCACAACAACTCTTCAGATGATGAAAGAAACTTGCAGTATCAAGAATTATCACTAAGCCTAGGAAT...

Protein

Download Protein FASTA

481 aa · LXL04_008859|LXL04_008859|OH1004|PROTEIN

MATYYPTSSNHQRDVFQNSYDSYQESPCPPVDIMYQNQTTTDTSFLELLSNNMQPNPQILSQVKDHNNSSDDERNLQYQELSLSLGIQIPSSSMDLPSFQYNYLDTHLQDSSNHGSQSNKVENVDYLSFDLVNGAKNGQCSISDTYDVSYGLVGSSSSSIRILDSKYLKPSQELLEEVANLREALRQLKINRLNNLHTLRVDDKKDSKFTPHESTTTSSNEISASEKQDLHNKVTKLFSFLDEVDRKYREYCNQLQIVEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008859`
TK1151 ID	TkA03G319550
OH-1004 ID	LXL04_008859
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_008859

Location Chr02:110635870-110637926 (+)

Description Similar to BLH7: BEL1-like homeodomain protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g16400`	BEL1-like homeodomain protein 7.	No verified direct reference in this release
`At1g75410`	Transcription factor involved in the nuclear import of SHOOT MERISTEMLESS (STM).	No verified direct reference in this release
`At4g34610`	BEL1-like homeodomain protein 6.	No verified direct reference in this release
`At1g19700`	BEL1-like homeodomain protein 10.	No verified direct reference in this release
`At2g23760`	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf.	The Arabidopsis BEL1-LIKE HOMEODOMAIN proteins SAW1 and SAW2 act redundantly to regulate KNOX expression spatially in leaf margins.2007 · DOI: 10.1105/tpc.106.048769

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008859 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0048363 mucilage pectin metabolic process Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G19700

ath:AT1G75410

ath:AT2G16400

ath:AT2G23760

ath:AT4G34610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.863

Rank 1 · LXL04_008859 · OH-1004

Cytoplasm0.238

Rank 2 · LXL04_008859 · OH-1004

Cell membrane0.023

Rank 3 · LXL04_008859 · OH-1004

Mitochondrion0.023

Rank 4 · LXL04_008859 · OH-1004

Lysosome / Vacuole0.014

Rank 5 · LXL04_008859 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07526.17POX162-293 aa

PF05920.18Homeobox_KN358-397 aa

PF00046.36Homeodomain365-397 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008859	`PF07526.17`	POX	162	293	1.6e-38	133.0
LXL04_008859	`PF05920.18`	Homeobox_KN	358	397	5.7e-20	71.6
LXL04_008859	`PF00046.36`	Homeodomain	365	397	1.4e-07	31.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SIW1`	Arabidopsis thaliana	BEL1-like homeodomain protein 7	56.757%	Swiss-Prot	moderate database homology
`Q9FWS9`	Arabidopsis thaliana	BEL1-like homeodomain protein 3	41.286%	Swiss-Prot	moderate database homology
`O65685`	Arabidopsis thaliana	BEL1-like homeodomain protein 6	51.877%	Swiss-Prot	moderate database homology
`Q9FXG8`	Arabidopsis thaliana	BEL1-like homeodomain protein 10	43.407%	Swiss-Prot	moderate database homology
`Q94KL5`	Arabidopsis thaliana	BEL1-like homeodomain protein 4	46.850%	Swiss-Prot	moderate database homology

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