Gene Card
Gene overview
cDNA / CDS / Protein Sequences
4869 bp · LXL04_008699|LXL04_008699|OH1004|cDNA
ATGACTGAAGAAACCTTCGACATGAGCACAAGGATAGATGTAGATGTAGATGTAGATGTAGATGTAGATATACCTGATTTTGTATGGGAAAGTACATGGGAGTATTTGTCGGATGGAATTCTATACAATCAACGACAACGTTTGAAGTTTCCAGAATTATCACTTAATGAAGATCAACTTCAAAACTTGACGTTGTTTGAGATCGAGTCATTTTTATTGCGTAACAATTCCACGAAAAACTTTCAAACAACGCCGTACCC...
4869 bp · LXL04_008699|LXL04_008699|OH1004|CDS
ATGACTGAAGAAACCTTCGACATGAGCACAAGGATAGATGTAGATGTAGATGTAGATGTAGATGTAGATATACCTGATTTTGTATGGGAAAGTACATGGGAGTATTTGTCGGATGGAATTCTATACAATCAACGACAACGTTTGAAGTTTCCAGAATTATCACTTAATGAAGATCAACTTCAAAACTTGACGTTGTTTGAGATCGAGTCATTTTTATTGCGTAACAATTCCACGAAAAACTTTCAAACAACGCCGTACCC...
Protein
Download Protein FASTA1622 aa · LXL04_008699|LXL04_008699|OH1004|PROTEIN
MTEETFDMSTRIDVDVDVDVDVDIPDFVWESTWEYLSDGILYNQRQRLKFPELSLNEDQLQNLTLFEIESFLLRNNSTKNFQTTPYPNHEFVASSNNRLISKELSYDTITLQQEAETLITSLTTEQKCVFDDIIKAIQENKGGRFLFMVLVEPTLSATIRSKGQIVLNVASGGVVSLLLTGGRTTHSRFHIPLNLNEYSLCFIKPNNDVSRLLKQTSLIIWDEAPMVHKHAFEALERTIKDVLTCDGVLNSHLPFGDKVI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_008699 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_008699 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:106415675-106428791 (+) | |||||||||
| Description | Similar to HDA5: Histone deacetylase 5 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000209 protein polyubiquitination Biological Process GO:0001932 regulation of protein phosphorylation Biological Process GO:0006338 chromatin remodeling Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006476 protein deacetylation Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0006515 protein quality control for misfolded or incompletely synthesized proteins Biological Process GO:0006886 intracellular protein transport Biological Process GO:0007015 actin filament organization Biological Process GO:0007026 negative regulation of microtubule depolymerization Biological Process GO:0007173 epidermal growth factor receptor signaling pathway Biological Process GO:0009908 flower development Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT5G61060 ath:AT5G61070 mmu:15185 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF05970.21PIF1122-337 aaPF21530.4Pif1_2B_dom435-477 aaPF00850.25Hist_deacetyl623-922 aaPF00850.25Hist_deacetyl1013-1312 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_008699 | PF05970.21 | PIF1 | 122 | 337 | 4.5e-72 | 243.0 |
| LXL04_008699 | PF21530.4 | Pif1_2B_dom | 435 | 477 | 1.8e-17 | 63.5 |
| LXL04_008699 | PF00850.25 | Hist_deacetyl | 623 | 922 | 3.6e-185 | 614.9 |
| LXL04_008699 | PF00850.25 | Hist_deacetyl | 1013 | 1312 | 3.6e-185 | 614.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.