LXL04_008652 | RubberDandelionOmics

Gene overview

LXL04_008652

Reference: OH-1004 Chr: Chr02 Coordinates: 105232214-105233331 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

954 bp · LXL04_008652|LXL04_008652|OH1004|cDNA

ATGAATTTACTTAATTGCCCCTCTCATGCATCTATTTATGCCCCTATACCTCTCCCTCAACATTCCACCCCACTCTTCATTTTCATCAAGAAAGTCCTCTTTATATCGAAAGGTATCACCTTTTTATCTTTTATTCATTTCCCTTTTCAAATTTCACAATCTTTAAACCTTAAAGATTTAATATTTCGTAAATTGTACAGGAAAATGGCTCAAATTGGGCTATTAGCTATGGGTATTCTCTCAATGGTCTCTATGGTTCA...

CDS

Download CDS FASTA

954 bp · LXL04_008652|LXL04_008652|OH1004|CDS

ATGAATTTACTTAATTGCCCCTCTCATGCATCTATTTATGCCCCTATACCTCTCCCTCAACATTCCACCCCACTCTTCATTTTCATCAAGAAAGTCCTCTTTATATCGAAAGGTATCACCTTTTTATCTTTTATTCATTTCCCTTTTCAAATTTCACAATCTTTAAACCTTAAAGATTTAATATTTCGTAAATTGTACAGGAAAATGGCTCAAATTGGGCTATTAGCTATGGGTATTCTCTCAATGGTCTCTATGGTTCA...

Protein

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317 aa · LXL04_008652|LXL04_008652|OH1004|PROTEIN

MNLLNCPSHASIYAPIPLPQHSTPLFIFIKKVLFISKGITFLSFIHFPFQISQSLNLKDLIFRKLYRKMAQIGLLAMGILSMVSMVHGNNNGGWIEAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCAGERKWCRPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPIFQQIAQYKAGIVPVHYKRVPCVKKGGIRFTVNGHSYFNLVLITNVGGAGDVKAVAIKGSRTG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008652`
TK1151 ID	TkA03G349150
OH-1004 ID	LXL04_008652
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 78.549 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008652

Location Chr02:105232214-105233331 (+)

Description Similar to EXPA1: Expansin-A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g69530`	Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`At2g03090`	Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`At1g26770`	Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`At5g56320`	Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	LBD18 acts as a transcriptional activator that directly binds to the EXPANSIN14 promoter in promoting lateral root emergence of Arabidopsis.2013 · DOI: 10.1111/tpj.12013

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0823100`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008652 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006949 syncytium formation Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009828 plant-type cell wall loosening Biological Process

GO:0009831 plant-type cell wall modification involved in multidimensional cell growth Biological Process

GO:0010114 response to red light Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0010311 lateral root formation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G26770

ath:AT1G69530

ath:AT2G03090

ath:AT5G56320

dosa:Os01g0823100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.398

Rank 1 · LXL04_008652 · OH-1004

Lysosome / Vacuole0.260

Rank 2 · LXL04_008652 · OH-1004

Cytoplasm0.154

Rank 3 · LXL04_008652 · OH-1004

Endoplasmic reticulum0.141

Rank 4 · LXL04_008652 · OH-1004

Cell membrane0.066

Rank 5 · LXL04_008652 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22514.3EXPB1_D198-220 aa

PF29515.1Expansin_N108-180 aa

PF03330.25DPBB_1129-214 aa

PF01357.28Expansin_C225-302 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008652	`PF22514.3`	EXPB1_D1	98	220	1.8e-07	32.3
LXL04_008652	`PF29515.1`	Expansin_N	108	180	5.5e-10	40.2
LXL04_008652	`PF03330.25`	DPBB_1	129	214	4.2e-24	85.3
LXL04_008652	`PF01357.28`	Expansin_C	225	302	6.3e-32	110.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C554`	Arabidopsis thaliana	Expansin-A1	77.912%	Swiss-Prot	strong database homology
`O80622`	Arabidopsis thaliana	Expansin-A15	76.494%	Swiss-Prot	strong database homology
`Q9LDR9`	Arabidopsis thaliana	Expansin-A10	76.210%	Swiss-Prot	strong database homology
`Q9FMA0`	Arabidopsis thaliana	Expansin-A14	73.554%	Swiss-Prot	strong database homology
`Q40636`	Oryza sativa subsp. japonica	Expansin-A2	70.370%	Swiss-Prot	strong database homology

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