LXL04_008589 | RubberDandelionOmics

Gene overview

LXL04_008589

Reference: OH-1004 Chr: Chr02 Coordinates: 103402259-103404069 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

823 bp · LXL04_008589|LXL04_008589|OH1004|cDNA

ATGGATCCACCCATAATCAATGAGACTTCCTTCTCAGCGGCGAATCCTTCTTCTTACAGTTTAACTGAGATTTGGCCGTTTTCGTCCATCAATGGCGGTGGCAATGAGGGATTGGGGCTGAAGATGGGCAGCTTTATCAACGGATTTGGGGAAGCCGGCAATAACCGAGATGAGGAATCTTCGGTGACGGAGCACAGTGGTAGCGGAAGGAAGCGGAGGGATGCTAATTCTGAAGACGAATCTTCCAAGCTCGTCTCCAC...

CDS

Download CDS FASTA

765 bp · LXL04_008589|LXL04_008589|OH1004|CDS

ATGGATCCACCCATAATCAATGAGACTTCCTTCTCAGCGGCGAATCCTTCTTCTTACAGTTTAACTGAGATTTGGCCGTTTTCGTCCATCAATGGCGGTGGCAATGAGGGATTGGGGCTGAAGATGGGCAGCTTTATCAACGGATTTGGGGAAGCCGGCAATAACCGAGATGAGGAATCTTCGGTGACGGAGCACAGTGGTAGCGGAAGGAAGCGGAGGGATGCTAATTCTGAAGACGAATCTTCCAAGCTCGTCTCCAC...

Protein

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254 aa · LXL04_008589|LXL04_008589|OH1004|PROTEIN

MDPPIINETSFSAANPSSYSLTEIWPFSSINGGGNEGLGLKMGSFINGFGEAGNNRDEESSVTEHSGSGRKRRDANSEDESSKLVSTSSGNNLSNSNGKRTKMSESKDELSGLKVDGESSKLSEPPKDYIHVRARRGQATDSHSLAERARREKISERMRILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNTRMNTPIERYPTKDVGHPPPFDATGLLFSGQESQQPEWLHMQLGSSFERGT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008589`
TK1151 ID	TkA03G356080
OH-1004 ID	LXL04_008589
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 87.647 / OH-1004 58.661 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008589

Location Chr02:103402259-103404069 (+)

Description Similar to BHLH79: Transcription factor bHLH79

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g62610`	Transcription factor bHLH79.	No verified direct reference in this release
`At1g59640`	Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size.	No verified direct reference in this release
`At3g07340`	Transcription factor bHLH62.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0193800`	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes.	No verified direct reference in this release
`Os03g0802900`	Transcription factor that may regulate jasmonate-regulated genes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008589 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0048446 petal morphogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G59640

ath:AT3G07340

ath:AT5G62610

dosa:Os03g0802900

dosa:Os07g0193800

osa:4334471

osa:4342637

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.977

Rank 1 · LXL04_008589 · OH-1004

Cytoplasm0.093

Rank 2 · LXL04_008589 · OH-1004

Cell membrane0.026

Rank 3 · LXL04_008589 · OH-1004

Endoplasmic reticulum0.013

Rank 4 · LXL04_008589 · OH-1004

Plastid0.010

Rank 5 · LXL04_008589 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00010.32HLH142-189 aa

PF23173.3bHLH_SAC51147-191 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008589	`PF00010.32`	HLH	142	189	1.1e-08	35.5
LXL04_008589	`PF23173.3`	bHLH_SAC51	147	191	1.7e-08	35.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LV17`	Arabidopsis thaliana	Transcription factor bHLH79	54.417%	Swiss-Prot	strong database homology
`Q0JXE7`	Arabidopsis thaliana	Transcription factor BPE	54.884%	Swiss-Prot	strong database homology
`Q9SRT2`	Arabidopsis thaliana	Transcription factor bHLH62	57.718%	Swiss-Prot	moderate database homology
`Q69WS3`	Oryza sativa subsp. japonica	Transcription factor BHLH094	57.416%	Swiss-Prot	strong database homology
`Q84T08`	Oryza sativa subsp. japonica	Transcription factor BHLH089	57.214%	Swiss-Prot	moderate database homology

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