LXL04_008187 | RubberDandelionOmics

Gene overview

LXL04_008187

Reference: OH-1004 Chr: Chr02 Coordinates: 91653119-91656126 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1209 bp · LXL04_008187|LXL04_008187|OH1004|cDNA

ATGCCACTATCGCCACCAGCAAAGTTTTCATCCCTCATATCCATCACCGGGAACGCCCGTGATCTCTTTGCCTTCGCCACTGCAAACTCCACCCCTTTTAAATTTCAGGCCGTTTTGAAGACAATTTTGAAGCCGATGAAACCTCCAGGTCTAATTGGAGAAAACGTTGCCAGCGTCGGGTTTTTGGTGAACGAGCTGCAGGAGAAGAGGTTCAAGAAGATTGAAAGCTTATTAAATGTCATTATCTTGCTAAATCCCAT...

CDS

Download CDS FASTA

1209 bp · LXL04_008187|LXL04_008187|OH1004|CDS

ATGCCACTATCGCCACCAGCAAAGTTTTCATCCCTCATATCCATCACCGGGAACGCCCGTGATCTCTTTGCCTTCGCCACTGCAAACTCCACCCCTTTTAAATTTCAGGCCGTTTTGAAGACAATTTTGAAGCCGATGAAACCTCCAGGTCTAATTGGAGAAAACGTTGCCAGCGTCGGGTTTTTGGTGAACGAGCTGCAGGAGAAGAGGTTCAAGAAGATTGAAAGCTTATTAAATGTCATTATCTTGCTAAATCCCAT...

Protein

Download Protein FASTA

402 aa · LXL04_008187|LXL04_008187|OH1004|PROTEIN

MPLSPPAKFSSLISITGNARDLFAFATANSTPFKFQAVLKTILKPMKPPGLIGENVASVGFLVNELQEKRFKKIESLLNVIILLNPICVYTLNTFITVDVISAIEFDKAGDHLATGDRGGCVVLFERTDQTNHGVHRRVLEGMDCSSSRHPEYRYKTEFQSHEPEVQEKKIKKICNFNLDPSKQLKNGFICSSNAPTSLRLPMVTSHDTSLLARCRRTFAHAHDYHINSISNNSDGETFISADGLRINLWNLEINSQSFN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008187`
TK1151 ID	TkA04G402280
OH-1004 ID	LXL04_008187
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	82.600
Protein coverage (%)	TK1151 100.000 / OH-1004 77.363 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008187

Location Chr02:91653119-91656126 (-)

Description Similar to PP2AB2: Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g17720`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment.	No verified direct reference in this release
`At1g51690`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0224200`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment.	No verified direct reference in this release
`UniProt: A2X2K3`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment.	No verified direct reference in this release
`Os06g0563300`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_008187 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006470 protein dephosphorylation Biological Process

GO:0000159 protein phosphatase type 2A complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0019888 protein phosphatase regulator activity Molecular Function

KEGG gene cross-reference

ath:AT1G17720

ath:AT1G51690

dosa:Os02g0224200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.421

Rank 1 · LXL04_008187 · OH-1004

Nucleus0.341

Rank 2 · LXL04_008187 · OH-1004

Cell membrane0.103

Rank 3 · LXL04_008187 · OH-1004

Golgi apparatus0.102

Rank 4 · LXL04_008187 · OH-1004

Endoplasmic reticulum0.098

Rank 5 · LXL04_008187 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q39247`	Arabidopsis thaliana	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	58.423%	Swiss-Prot	moderate database homology
`Q38821`	Arabidopsis thaliana	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	56.747%	Swiss-Prot	moderate database homology
`Q0E2P1`	Oryza sativa subsp. japonica	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	55.862%	Swiss-Prot	moderate database homology
`A2X2K3`	Oryza sativa subsp. indica	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	55.862%	Swiss-Prot	moderate database homology
`Q5Z8Z7`	Oryza sativa subsp. japonica	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	54.355%	Swiss-Prot	moderate database homology

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