Gene Card
Gene overview
cDNA / CDS / Protein Sequences
864 bp · LXL04_008068|LXL04_008068|OH1004|cDNA
ATGGTCCATTATACTGATGAGATTACAGAAGTCCTTAATAATCTTCATCAAGGACCTGGAAAACCCTTGTTGTTTCTTCTTCATGGGTTGAATACTGATAGCAAAAACTTCTCTAAACCAGCAGCATTTGAGGGTATTGAGAAATTCGAGATAGATCTTAAGACCTTACATCCTATTTTGACTGAATGTCGTGTTTTGAAGTCAAAATTGGAGATTTCTATGATTCAGTATGCCAATGAAATAAGTTCTGAAGCTCACAT...
864 bp · LXL04_008068|LXL04_008068|OH1004|CDS
ATGGTCCATTATACTGATGAGATTACAGAAGTCCTTAATAATCTTCATCAAGGACCTGGAAAACCCTTGTTGTTTCTTCTTCATGGGTTGAATACTGATAGCAAAAACTTCTCTAAACCAGCAGCATTTGAGGGTATTGAGAAATTCGAGATAGATCTTAAGACCTTACATCCTATTTTGACTGAATGTCGTGTTTTGAAGTCAAAATTGGAGATTTCTATGATTCAGTATGCCAATGAAATAAGTTCTGAAGCTCACAT...
Protein
Download Protein FASTA287 aa · LXL04_008068|LXL04_008068|OH1004|PROTEIN
MVHYTDEITEVLNNLHQGPGKPLLFLLHGLNTDSKNFSKPAAFEGIEKFEIDLKTLHPILTECRVLKSKLEISMIQYANEISSEAHIEVMRKVKPEMKEYQLESTFLHHTYFYGSCRHCSYTCICATGDNSSVLHYGHAAAPNDRTLRDGDMALLDMGAEFHFYASDITCSFPVNGKFTSNQRLIYNSVLDAHDDVISTMKPGVNWVDMHKLAEKTILQSLKKGSFLSMYEWPEESDGLARKVWEICMKKRIPDTMKKAL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_008068 |
|---|---|
| TK1151 ID | TkA07G402880 |
| OH-1004 ID | LXL04_008068 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 99.100 |
| Protein coverage (%) | TK1151 91.165 / OH-1004 79.094Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_008068 |
|---|---|
| Location | Chr02:83548349-83550151 (+) |
| Description | Similar to Pepd: Xaa-Pro dipeptidase |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0006520 amino acid metabolic process Biological Process GO:0030574 collagen catabolic process Biological Process GO:0043069 negative regulation of programmed cell death Biological Process GO:0070062 extracellular exosome Cellular Component GO:0004181 metallocarboxypeptidase activity Molecular Function GO:0008233 peptidase activity Molecular Function GO:0030145 manganese ion binding Molecular Function GO:0070006 metalloaminopeptidase activity Molecular Function GO:0102009 proline dipeptidase activity Molecular Function |
| KEGG gene cross-reference | ddi:DDB_G0269382 hsa:5184 mmu:18624 pon:100174216 rno:292808 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00557.30Peptidase_M2475-219 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_008068 | PF00557.30 | Peptidase_M24 | 75 | 219 | 8.7e-36 | 124.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.