LXL04_007821 | RubberDandelionOmics

Gene overview

LXL04_007821

Reference: OH-1004 Chr: Chr02 Coordinates: 63389214-63390814 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

855 bp · LXL04_007821|LXL04_007821|OH1004|cDNA

ATGTTGCAAAGCATTCACTCCTGTGAAACGATGACTGAGATAAACACGAGTAGCTTAACCAAAAGGAAATCGTCTGTAGACAACAGTGGGATAAAGATGCAACCGACAGGCAGTGGCGGTGGCGGAGGACTATCCAGGTTCCGGTCAGCTCCGGCGACATGGCTGGAAGCACTGCTtgaatcagaagaagaagatgtaATCATTGACCCACCAAAACCAACCTTAACTCCACCTCCTCCACATAATATCGCCGGCACCAC...

CDS

Download CDS FASTA

855 bp · LXL04_007821|LXL04_007821|OH1004|CDS

ATGTTGCAAAGCATTCACTCCTGTGAAACGATGACTGAGATAAACACGAGTAGCTTAACCAAAAGGAAATCGTCTGTAGACAACAGTGGGATAAAGATGCAACCGACAGGCAGTGGCGGTGGCGGAGGACTATCCAGGTTCCGGTCAGCTCCGGCGACATGGCTGGAAGCACTGCTTGAATCAGAAGAAGAAGATGTAATCATTGACCCACCAAAACCAACCTTAACTCCACCTCCTCCACATAATATCGCCGGCACCAC...

Protein

Download Protein FASTA

284 aa · LXL04_007821|LXL04_007821|OH1004|PROTEIN

MLQSIHSCETMTEINTSSLTKRKSSVDNSGIKMQPTGSGGGGGLSRFRSAPATWLEALLESEEEDVIIDPPKPTLTPPPPHNIAGTTTRPAFADPNIFLPSPVGLRQNSSPAEFFSQINNPDGYLSNYSTPNYEDYLSSSYHNVKPSRDVEQQAKFTTQLSGDQSALLDVEMDKLLGDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKVDLIPPEVSFIGVLVLIFDGFEMQQTNTADMLEEAVEY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007821`
TK1151 ID	TkA03G213240
OH-1004 ID	LXL04_007821
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.500
Protein coverage (%)	TK1151 100.000 / OH-1004 88.732 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007821

Location Chr02:63389214-63390814 (-)

Description Similar to BHLH80: Transcription factor bHLH80

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g35460`	Transcription factor bHLH80.	No verified direct reference in this release
`At4g09180`	Transcription factor bHLH81.	No verified direct reference in this release
`At1g51140`	Transcription factor bHLH122.	No verified direct reference in this release
`At2g42280`	Transcription factor bHLH130.	No verified direct reference in this release
`At1g05805`	Transcription factor bHLH128.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007821 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0006808 regulation of nitrogen utilization Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010119 regulation of stomatal movement Biological Process

KEGG gene cross-reference

ath:AT1G05805

ath:AT1G35460

ath:AT1G51140

ath:AT2G42280

ath:AT4G09180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.929

Rank 1 · LXL04_007821 · OH-1004

Cytoplasm0.189

Rank 2 · LXL04_007821 · OH-1004

Cell membrane0.024

Rank 3 · LXL04_007821 · OH-1004

Mitochondrion0.015

Rank 4 · LXL04_007821 · OH-1004

Endoplasmic reticulum0.013

Rank 5 · LXL04_007821 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00010.32HLH196-265 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007821	`PF00010.32`	HLH	196	265	2.3e-07	31.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C8P8`	Arabidopsis thaliana	Transcription factor bHLH80	51.362%	Swiss-Prot	strong database homology
`Q9M0R0`	Arabidopsis thaliana	Transcription factor bHLH81	47.876%	Swiss-Prot	moderate database homology
`Q9C690`	Arabidopsis thaliana	Transcription factor bHLH122	53.913%	Swiss-Prot	weak database homology
`Q66GR3`	Arabidopsis thaliana	Transcription factor bHLH130	55.263%	Swiss-Prot	weak database homology
`Q8H102`	Arabidopsis thaliana	Transcription factor bHLH128	32.143%	Swiss-Prot	moderate database homology

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