LXL04_007739 | RubberDandelionOmics

Gene overview

LXL04_007739

Reference: OH-1004 Chr: Chr02 Coordinates: 58924698-58941024 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1098 bp · LXL04_007739|LXL04_007739|OH1004|cDNA

ATGCAACCTCTTACTTTTGTCAAACTTTCAGACTCTTCGGCATGTCTTACTTTTATCTTGTGCTCTCTTGTTTTGTTTGGTGATCATGGTGGAGCACTGGTGACATTACCTCAGAATGTGATTGTGCCGGCAGTTATAGCGTTTGGGGACTCAGTAGTGGATCAAGGAGTTAACAATAATCTCAAAACTTTGGTTAAAGCAAATTTTTTTCCTTATGGAATGGATTTTGTGCCACAAAAATCAACCGGGAGATTTTCGAA...

CDS

Download CDS FASTA

1098 bp · LXL04_007739|LXL04_007739|OH1004|CDS

ATGCAACCTCTTACTTTTGTCAAACTTTCAGACTCTTCGGCATGTCTTACTTTTATCTTGTGCTCTCTTGTTTTGTTTGGTGATCATGGTGGAGCACTGGTGACATTACCTCAGAATGTGATTGTGCCGGCAGTTATAGCGTTTGGGGACTCAGTAGTGGATCAAGGAGTTAACAATAATCTCAAAACTTTGGTTAAAGCAAATTTTTTTCCTTATGGAATGGATTTTGTGCCACAAAAATCAACCGGGAGATTTTCGAA...

Protein

Download Protein FASTA

365 aa · LXL04_007739|LXL04_007739|OH1004|PROTEIN

MQPLTFVKLSDSSACLTFILCSLVLFGDHGGALVTLPQNVIVPAVIAFGDSVVDQGVNNNLKTLVKANFFPYGMDFVPQKSTGRFSNNRTPADMIAEELGIKDLLPAYPDVSHDDKELVTGVSFASGGSGYDPETPKIVDVLSMNDQLTNFKEYIEKLKAIVGEERTKFILANSLIMVVAGSDDLTNTYFAVGIRKLHYDIHSYTNLIVSSASNFTQDIYNLGARRIAVFGAPPLGCLPSQRTLRGGEFRACAKEHNEAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007739`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007739

Location Chr02:58924698-58941024 (+)

Description Similar to EXL3: GDSL esterase/lipase EXL3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75900`	GDSL esterase/lipase EXL3.	No verified direct reference in this release
`At1g75880`	GDSL esterase/lipase EXL1.	No verified direct reference in this release
`UniProt: Q9FHW9`	GDSL esterase/lipase At5g42170.	No verified direct reference in this release
`At1g20120`	GDSL esterase/lipase At1g20120.	No verified direct reference in this release
`At1g75890`	GDSL esterase/lipase EXL2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_007739 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016746 acyltransferase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G20120

ath:AT1G75880

ath:AT1G75890

ath:AT1G75900

ath:AT5G42170

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.485

Rank 1 · LXL04_007739 · OH-1004

Lysosome / Vacuole0.190

Rank 2 · LXL04_007739 · OH-1004

Cytoplasm0.126

Rank 3 · LXL04_007739 · OH-1004

Endoplasmic reticulum0.116

Rank 4 · LXL04_007739 · OH-1004

Cell membrane0.080

Rank 5 · LXL04_007739 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL45-355 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007739	`PF00657.29`	Lipase_GDSL	45	355	2.8e-32	113.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94CH6`	Arabidopsis thaliana	GDSL esterase/lipase EXL3	56.772%	Swiss-Prot	strong database homology
`Q94CH8`	Arabidopsis thaliana	GDSL esterase/lipase EXL1	50.000%	Swiss-Prot	strong database homology
`Q9FHW9`	Arabidopsis thaliana	GDSL esterase/lipase At5g42170	47.478%	Swiss-Prot	moderate database homology
`P0DKJ6`	Arabidopsis thaliana	GDSL esterase/lipase At1g20120	47.112%	Swiss-Prot	moderate database homology
`Q94CH7`	Arabidopsis thaliana	GDSL esterase/lipase EXL2	45.777%	Swiss-Prot	moderate database homology

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