LXL04_007627 | RubberDandelionOmics

Gene overview

LXL04_007627

Reference: OH-1004 Chr: Chr02 Coordinates: 54652838-54656784 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1383 bp · LXL04_007627|LXL04_007627|OH1004|cDNA

ATGGACCACCGTATCATCTTCTTTCTCTCCCTTTCCACTCTCTCTGTCGCACCCTTTTCCGGAAACAACCATGGCTTCTCGTACTTGGAGTCTGTTAGTTTCCAAAACAGTGATATCGAGACCTTGAGAAACACAACATCGTTTGTTTTCCCTCCACAAAGACTACTACAAACGTTTTCCAAATCATGCAAGATTTGGTCGGAGGCTTGCTCAGAGGAGGTTTTGTTGATGGCGAAGCGGCCGGAGAACGTACGGTGGTT...

CDS

Download CDS FASTA

1383 bp · LXL04_007627|LXL04_007627|OH1004|CDS

ATGGACCACCGTATCATCTTCTTTCTCTCCCTTTCCACTCTCTCTGTCGCACCCTTTTCCGGAAACAACCATGGCTTCTCGTACTTGGAGTCTGTTAGTTTCCAAAACAGTGATATCGAGACCTTGAGAAACACAACATCGTTTGTTTTCCCTCCACAAAGACTACTACAAACGTTTTCCAAATCATGCAAGATTTGGTCGGAGGCTTGCTCAGAGGAGGTTTTGTTGATGGCGAAGCGGCCGGAGAACGTACGGTGGTT...

Protein

Download Protein FASTA

460 aa · LXL04_007627|LXL04_007627|OH1004|PROTEIN

MDHRIIFFLSLSTLSVAPFSGNNHGFSYLESVSFQNSDIETLRNTTSFVFPPQRLLQTFSKSCKIWSEACSEEVLLMAKRPENVRWLKSLRRRIHENPELAFQEFETSRLIRNELRKMEISYRFPLAITGIRATIGTGDAPFVALRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVTMLLGAARILKSREHLLKGTVVLIFQPAEEAGNGAKKMMADGALENVEAIFAAHVSHQHETGVIGSRPGPLLAGCGFFKVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007627`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_007627

Location Chr02:54652838-54656784 (+)

Description Similar to ILL6: IAA-amino acid hydrolase ILR1-like 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g44350`	Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA).	The amidohydrolases IAR3 and ILL6 contribute to jasmonoyl-isoleucine hormone turnover and generate 12-hydroxyjasmonic acid upon wounding in Arabidopsis leaves.2013 · DOI: 10.1074/jbc.m113.499228

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0691400`	Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA).	No verified direct reference in this release
`Os01g0560000`	Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA).	No verified direct reference in this release
`UniProt: Q84XG9`	Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA).	No verified direct reference in this release
`Os01g0706900`	Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007627 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009694 jasmonic acid metabolic process Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009850 auxin metabolic process Biological Process

GO:0010112 regulation of systemic acquired resistance Biological Process

GO:0005788 endoplasmic reticulum lumen Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0010179 IAA-Ala conjugate hydrolase activity Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:1990206 jasmonyl-Ile conjugate hydrolase activity Molecular Function

KEGG gene cross-reference

ath:AT1G44350

dosa:Os01g0560000

dosa:Os01g0706900

dosa:Os06g0691400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.340

Rank 1 · LXL04_007627 · OH-1004

Peroxisome0.292

Rank 2 · LXL04_007627 · OH-1004

Mitochondrion0.191

Rank 3 · LXL04_007627 · OH-1004

Nucleus0.146

Rank 4 · LXL04_007627 · OH-1004

Plastid0.095

Rank 5 · LXL04_007627 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01546.34Peptidase_M20144-452 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007627	`PF01546.34`	Peptidase_M20	144	452	3.8e-46	158.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VYX0`	Arabidopsis thaliana	IAA-amino acid hydrolase ILR1-like 6	69.500%	Swiss-Prot	strong database homology
`Q5Z678`	Oryza sativa subsp. japonica	IAA-amino acid hydrolase ILR1-like 6	67.089%	Swiss-Prot	strong database homology
`Q8S9S4`	Oryza sativa subsp. japonica	IAA-amino acid hydrolase ILR1-like 1	57.252%	Swiss-Prot	strong database homology
`Q84XG9`	Oryza sativa subsp. indica	IAA-amino acid hydrolase ILR1-like 1	56.997%	Swiss-Prot	strong database homology
`Q5N8F2`	Oryza sativa subsp. japonica	IAA-amino acid hydrolase ILR1-like 2	56.456%	Swiss-Prot	strong database homology

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