LXL04_007616 | RubberDandelionOmics

Gene overview

LXL04_007616

Reference: OH-1004 Chr: Chr02 Coordinates: 54280496-54282475 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

531 bp · LXL04_007616|LXL04_007616|OH1004|cDNA

ATGTCTGCTGAATCTACTTCCTCAATCTTTAGGAACCAGGTGGATTTACTCGATTTCATAGACTGGACGGGAGTCGAATGCCTTAATCAGAACACCAGCCATCCTTTCACCAATGCCGTGAAACAGGGTTATAGAGAAGATGAGGGTCTGAATCTGGAGAGTGATGCAGATGAGCAGCTTCTGATTTACATACCATTTACTCAAGTTATCAAACTGCATTCTATTGTCATTAAAGGGCCTGAGGAGGAAGGCCCTCAAAC...

CDS

Download CDS FASTA

531 bp · LXL04_007616|LXL04_007616|OH1004|CDS

ATGTCTGCTGAATCTACTTCCTCAATCTTTAGGAACCAGGTGGATTTACTCGATTTCATAGACTGGACGGGAGTCGAATGCCTTAATCAGAACACCAGCCATCCTTTCACCAATGCCGTGAAACAGGGTTATAGAGAAGATGAGGGTCTGAATCTGGAGAGTGATGCAGATGAGCAGCTTCTGATTTACATACCATTTACTCAAGTTATCAAACTGCATTCTATTGTCATTAAAGGGCCTGAGGAGGAAGGCCCTCAAAC...

Protein

Download Protein FASTA

176 aa · LXL04_007616|LXL04_007616|OH1004|PROTEIN

MSAESTSSIFRNQVDLLDFIDWTGVECLNQNTSHPFTNAVKQGYREDEGLNLESDADEQLLIYIPFTQVIKLHSIVIKGPEEEGPQTVKLYTNREHMGFSNVGDFPPSDTLALSPENLKGKPVVLKYVKFQNVRSLTIFIEDNQSGSELTKVQKIVLQGTTVETTDMKGLKKIEDH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007616`
TK1151 ID	TkA03G197270
OH-1004 ID	LXL04_007616
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007616

Location Chr02:54280496-54282475 (+)

Description Similar to At3g04780: PITH domain-containing protein At3g04780

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g04780`	PITH domain-containing protein At3g04780.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_007616 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0000502 proteasome complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0034399 nuclear periphery Cellular Component

GO:0015035 protein-disulfide reductase activity Molecular Function

GO:0015036 disulfide oxidoreductase activity Molecular Function

KEGG gene cross-reference

ath:AT3G04780

hsa:9352

mmu:53382

rno:140922

spo:2541028

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.740

Rank 1 · LXL04_007616 · OH-1004

Cytoplasm0.604

Rank 2 · LXL04_007616 · OH-1004

Mitochondrion0.040

Rank 3 · LXL04_007616 · OH-1004

Cell membrane0.029

Rank 4 · LXL04_007616 · OH-1004

Endoplasmic reticulum0.027

Rank 5 · LXL04_007616 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06201.20PITH10-173 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007616	`PF06201.20`	PITH	10	173	4.9e-53	180.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SQZ9`	Arabidopsis thaliana	PITH domain-containing protein At3g04780	82.386%	Swiss-Prot	strong database homology

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