LXL04_007606 | RubberDandelionOmics

Gene overview

LXL04_007606

Reference: OH-1004 Chr: Chr02 Coordinates: 53818088-53821343 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1854 bp · LXL04_007606|LXL04_007606|OH1004|cDNA

ATGGCGTCTATAACTGCTGTCGCCCGACTTGTCCATCTTAAACCATCTTCAAAATTAACCCCCAAATTCGTTTCAGCTACCAAACCACTTTTCACTTTCTGCACACTCAAACCATCGCATTCCCCAATCGTATCATCATCAGCTGCTTCAGTTAATTCTTCAACAGCAATGTCTTATGATAAACAACTCCTTGCTGCGAAGAAAGCTGCTTCCCTTGCTGCTCTTCTTTGCCAGGCATCTCTCTCCCTCTATCCCAATTA...

CDS

Download CDS FASTA

1854 bp · LXL04_007606|LXL04_007606|OH1004|CDS

ATGGCGTCTATAACTGCTGTCGCCCGACTTGTCCATCTTAAACCATCTTCAAAATTAACCCCCAAATTCGTTTCAGCTACCAAACCACTTTTCACTTTCTGCACACTCAAACCATCGCATTCCCCAATCGTATCATCATCAGCTGCTTCAGTTAATTCTTCAACAGCAATGTCTTATGATAAACAACTCCTTGCTGCGAAGAAAGCTGCTTCCCTTGCTGCTCTTCTTTGCCAGGCATCTCTCTCCCTCTATCCCAATTA...

Protein

Download Protein FASTA

617 aa · LXL04_007606|LXL04_007606|OH1004|PROTEIN

MASITAVARLVHLKPSSKLTPKFVSATKPLFTFCTLKPSHSPIVSSSAASVNSSTAMSYDKQLLAAKKAASLAALLCQASLSLYPNYLISRKPIWMIVLEHNVQKGLLQSDVQSKSDKSPVTVADYGSQVLVSFVLQQELPSQAFSLVAEEDSGDLRKEDSQETLQRITKLVNDTIANDGTYKVSPLSESDVLTIIDCGTSEGGSNGQHWVLDPIDGTKGFLRGDQYAIALGLLDEGKVVLGVLACPNLPLESINNKTQN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007606`
TK1151 ID	TkA03G195720
OH-1004 ID	LXL04_007606
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	65.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007606

Location Chr02:53818088-53821343 (+)

Description Similar to SAL1: SAL1 phosphatase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g63980`	Phosphatase that converts adenosine 3'-phosphate 5'- phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')- phosphoadenosine 5'-phosphate (PAP) to AMP.	FIERY1 encoding an inositol polyphosphate 1-phosphatase is a negative regulator of abscisic acid and stress signaling in Arabidopsis.2001 · DOI: 10.1101/gad.891901 Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors.2007 · DOI: 10.1105/tpc.107.055319 The SAL1 gene of Arabidopsis, encoding an enzyme with 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities, increases salt tolerance in yeast.1996 · DOI: 10.1105/tpc.8.3.529
`At5g64000`	Phosphatase that converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'-phosphoadenosine 5'-phosphate (3'-PAP) to AMP.	The Arabidopsis HAL2-like gene family includes a novel sodium-sensitive phosphatase.1999 · DOI: 10.1046/j.1365-313x.1999.00385.x
`At5g63990`	Phosphatase that converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'-phosphate (PAP) to AMP.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0183300`	Phosphatase that converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'-phosphate (PAP) to AMP.	No verified direct reference in this release
`UniProt: P0C5A3`	Phosphatase that converts adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) and 3'(2')-phosphoadenosine 5'-phosphate (PAP) to AMP.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007606 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000103 sulfate assimilation Biological Process

GO:0006401 RNA catabolic process Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009968 negative regulation of signal transduction Biological Process

GO:0010587 miRNA catabolic process Biological Process

GO:0042752 regulation of circadian rhythm Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0046854 phosphatidylinositol phosphate biosynthetic process Biological Process

KEGG gene cross-reference

ath:AT5G63980

dosa:Os12g0183300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.389

Rank 1 · LXL04_007606 · OH-1004

Cytoplasm0.292

Rank 2 · LXL04_007606 · OH-1004

Nucleus0.179

Rank 3 · LXL04_007606 · OH-1004

Mitochondrion0.107

Rank 4 · LXL04_007606 · OH-1004

Endoplasmic reticulum0.078

Rank 5 · LXL04_007606 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00459.31Inositol_P117-281 aa

PF00459.31Inositol_P477-608 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007606	`PF00459.31`	Inositol_P	117	281	4.8e-44	151.6
LXL04_007606	`PF00459.31`	Inositol_P	477	608	4.8e-44	151.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q42546`	Arabidopsis thaliana	3'(2'),5'-bisphosphate nucleotidase 1	71.282%	Swiss-Prot	weak database homology
`O49623`	Arabidopsis thaliana	3',5'-bisphosphate nucleotidase 2	55.508%	Swiss-Prot	weak database homology
`Q8GY63`	Arabidopsis thaliana	Probable 3'(2'),5'-bisphosphate nucleotidase 3	53.165%	Swiss-Prot	weak database homology
`Q2QWT4`	Oryza sativa subsp. japonica	3'(2'),5'-bisphosphate nucleotidase	58.559%	Swiss-Prot	weak database homology
`P0C5A3`	Oryza sativa	3'(2'),5'-bisphosphate nucleotidase	58.559%	Swiss-Prot	weak database homology

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