Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2240 bp · LXL04_007602|LXL04_007602|OH1004|cDNA
CGAATACCGATCACAAATAATCATCTTGGACTTCATCATCTTTAACTCTACCCCAAGAGTTCCACTCCAGAGTTGTTCCTATCTCTTCAGACGGGAAGAGTCACGGAAGCTCTGCAACAACAATGGACTTGACTACCAAACTTCACAGTATCGACCTCCGTTCAACTTTCCTAACCGGCACAGCCCTTTCTGACCTGCGTAAACCCTATTTCAGGCCTCGTATTCGCCCAATTTTGACAACCATAAGCAGTTGTTCCAGT...
2118 bp · LXL04_007602|LXL04_007602|OH1004|CDS
ATGGACTTGACTACCAAACTTCACAGTATCGACCTCCGTTCAACTTTCCTAACCGGCACAGCCCTTTCTGACCTGCGTAAACCCTATTTCAGGCCTCGTATTCGCCCAATTTTGACAACCATAAGCAGTTGTTCCAGTAAACCCACAAAAAAATTCCAACAACATCATCCAATTAGGTTATCCGCCGTTGCTGTAGATACCGAAACCAGTGCTATTACGAGTGTAGAAGAAGACGATATAGAGAGTCTGTTTTCGAAAAA...
Protein
Download Protein FASTA705 aa · LXL04_007602|LXL04_007602|OH1004|PROTEIN
MDLTTKLHSIDLRSTFLTGTALSDLRKPYFRPRIRPILTTISSCSSKPTKKFQQHHPIRLSAVAVDTETSAITSVEEDDIESLFSKNSETVDYRRGNKQSGNGASSISSGVRLENISKSYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQLRIISGMEEPDSGNIVKAKPNMRISFLSQEFEVSLTRTVKEEFLSAFKEEMDISNRLEKVQKAIEGSVDDLELMGRLLDEFDLLQRRAQAINLDIVDVKISKLMPELG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_007602 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_007602 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:53633226-53636342 (-) | |||||||||
| Description | Similar to ABCF5: ABC transporter F family member 5 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009624 response to nematode Biological Process GO:0009507 chloroplast Cellular Component GO:0003677 DNA binding Molecular Function GO:0003729 mRNA binding Molecular Function GO:0003747 translation release factor activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0016887 ATP hydrolysis activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT5G09930 ath:AT5G64840 bsu:BSU05950 ecj:JW0804 eco:b0820 ecoc:C3026_05155 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00005.34ABC_tran126-301 aaPF12848.14ABC_tran_Xtn340-427 aaPF00005.34ABC_tran454-585 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_007602 | PF00005.34 | ABC_tran | 126 | 301 | 4.7e-55 | 186.7 |
| LXL04_007602 | PF12848.14 | ABC_tran_Xtn | 340 | 427 | 3.9e-16 | 59.6 |
| LXL04_007602 | PF00005.34 | ABC_tran | 454 | 585 | 4.7e-55 | 186.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.