LXL04_007594 | RubberDandelionOmics

Gene overview

LXL04_007594

Reference: OH-1004 Chr: Chr02 Coordinates: 53313623-53322377 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4581 bp · LXL04_007594|LXL04_007594|OH1004|cDNA

atgtcttctttTTCGATGAAATTGGACAATCAGACATTGTTCAACTTAGCAAATTGGATTGGATCAAGTTCAGAAGTTCAGACTCTATTTCCAGACGATTACGAGATTTGGGCTCTAtacatggaggattatctcctgGGTCTCGAAAATGGCTATATGATCTGGAAATCTGTTACCAAAGGTCCTCACAAATTTCCATTAACTGATGAATCTGATAGCATCTCAGTTTACACCAATGAAGAATATGAGGAGCTAAAAAC...

CDS

Download CDS FASTA

4581 bp · LXL04_007594|LXL04_007594|OH1004|CDS

ATGTCTTCTTTTTCGATGAAATTGGACAATCAGACATTGTTCAACTTAGCAAATTGGATTGGATCAAGTTCAGAAGTTCAGACTCTATTTCCAGACGATTACGAGATTTGGGCTCTATACATGGAGGATTATCTCCTGGGTCTCGAAAATGGCTATATGATCTGGAAATCTGTTACCAAAGGTCCTCACAAATTTCCATTAACTGATGAATCTGATAGCATCTCAGTTTACACCAATGAAGAATATGAGGAGCTAAAAAC...

Protein

Download Protein FASTA

1526 aa · LXL04_007594|LXL04_007594|OH1004|PROTEIN

MSSFSMKLDNQTLFNLANWIGSSSEVQTLFPDDYEIWALYMEDYLLGLENGYMIWKSVTKGPHKFPLTDESDSISVYTNEEYEELKTTPGITISKENKERIEIDLKAKRELRFALTPNVFRLVRNCNSANALWKKLEEMYGGNKKQLKSQQTGILTKLHRCMVQGLFTDNLYKSYSIKYCTFRNRGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDYAFEAIKKAAELEEEVNQASKLEGNALEQKVTSLNGQVESA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007594`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007594

Location Chr02:53313623-53322377 (-)

Description Similar to ALATS: Alanine--tRNA ligase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g50200`	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_007594 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006419 alanyl-tRNA aminoacylation Biological Process

GO:0070143 mitochondrial alanyl-tRNA aminoacylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0000049 tRNA binding Molecular Function

GO:0002161 aminoacyl-tRNA deacylase activity Molecular Function

GO:0004813 alanine-tRNA ligase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:1990825 sequence-specific mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G50200

bmor:693023

ddi:DDB_G0277823

sce:YOR335C

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.905

Rank 1 · LXL04_007594 · OH-1004

Cytoplasm0.171

Rank 2 · LXL04_007594 · OH-1004

Mitochondrion0.028

Rank 3 · LXL04_007594 · OH-1004

Cell membrane0.018

Rank 4 · LXL04_007594 · OH-1004

Extracellular0.012

Rank 5 · LXL04_007594 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14223.15Retrotran_gag_288-148 aa

PF07973.20tRNA_SAD185-213 aa

PF02992.21Transposase_21442-483 aa

PF02992.21Transposase_21483-611 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007594	`PF14223.15`	Retrotran_gag_2	88	148	1.9e-06	28.5
LXL04_007594	`PF07973.20`	tRNA_SAD	185	213	8.5e-08	32.8
LXL04_007594	`PF02992.21`	Transposase_21	442	483	7.4e-69	231.9
LXL04_007594	`PF02992.21`	Transposase_21	483	611	7.4e-69	231.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P36428`	Arabidopsis thaliana	Alanine--tRNA ligase	56.911%	Swiss-Prot	weak database homology

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