LXL04_007573 | RubberDandelionOmics

Gene overview

LXL04_007573

Reference: OH-1004 Chr: Chr02 Coordinates: 52800395-52804879 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

726 bp · LXL04_007573|LXL04_007573|OH1004|cDNA

ATGGTAGGAAATACTCGAAGTCGCCCCTTCACTATATTCCAAATGAGTGGAACTGGTATGAACGTGTAGGAACATACCCACGGAAATCAGGGATATCAAAGTTTGGGATTATTATCTATGCATAAATCTCACTACAGAGTTGCTGAATTTCATCCTAAGAGAGGCTCAAGATCAGTGCGTGAACCATATCTTCGAGTTTTGTCGGAAATTGAAAGAGAAGGGAAATTTATCCCAATCACAGCTTTCTTCGAGATGGTTGG...

CDS

Download CDS FASTA

624 bp · LXL04_007573|LXL04_007573|OH1004|CDS

TTGGGATTATTATCTATGCATAAATCTCACTACAGAGTTGCTGAATTTCATCCTAAGAGAGGCTCAAGATCAGTGCGTGAACCATATCTTCGAGTTTTGTCGGAAATTGAAAGAGAAGGGAAATTTATCCCAATCACAGCTTTCTTCGAGATGGTTGGCTATGCTCTTAAGGTGGTTGATGGTTTGTGGATTCTTTTAATTGTGGGAAGTTGTTGCTTGATCACTGTGTTTATGTCTTCATCCCAAGGTCACGCTCCTCA...

Protein

Download Protein FASTA

207 aa · LXL04_007573|LXL04_007573|OH1004|PROTEIN

MGLLSMHKSHYRVAEFHPKRGSRSVREPYLRVLSEIEREGKFIPITAFFEMVGYALKVVDGLWILLIVGSCCLITVFMSSSQGHAPQLHRRRTPLRREGNRRRTPLHVSVSLRSSDVRRPLLCLCRCFPPTNDDRRPRFCLATFLRRPTTGDHFRYPFDRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007573`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007573

Location Chr02:52800395-52804879 (-)

Description Similar to RPL22B: 60S ribosomal protein L22-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g05560`	Large ribosomal subunit protein eL22z.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_007573 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002181 cytoplasmic translation Biological Process

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005840 ribosome Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0030684 preribosome Cellular Component

GO:1990904 ribonucleoprotein complex Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G05560

cel:CELE_C27A2.2

ddi:DDB_G0288101

ddi:DDB_G0290091

spo:2543021

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.447

Rank 1 · LXL04_007573 · OH-1004

Cytoplasm0.371

Rank 2 · LXL04_007573 · OH-1004

Cell membrane0.132

Rank 3 · LXL04_007573 · OH-1004

Mitochondrion0.105

Rank 4 · LXL04_007573 · OH-1004

Endoplasmic reticulum0.086

Rank 5 · LXL04_007573 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01776.23Ribosomal_L22e160-206 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007573	`PF01776.23`	Ribosomal_L22e	160	206	9.8e-18	65.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M9W1`	Arabidopsis thaliana	Large ribosomal subunit protein eL22z	94.286%	Swiss-Prot	weak database homology

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