LXL04_007490 | RubberDandelionOmics

Gene overview

LXL04_007490

Reference: OH-1004 Chr: Chr02 Coordinates: 50445611-50448902 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1509 bp · LXL04_007490|LXL04_007490|OH1004|cDNA

ATGGGCGGCGGAGGAGGTGCTGGAGGTGTCCGTGGAATTCTGCTGGACAGCTCTGTAATCTTGGACTCCACCTCAAACGACAATGAAACTGCATCAATTCGCTCCGGAGCTGACTATTTACTTGGCAAGCTTCGACATTCCAACATTCCGACGGGAATATGTTATGAAGTAGGTCTCCCAGAACCAAAGGTGAAGCTTCTTGAGAAGCTGATTAGTGAATACTCATTTGAGGGATTCATCTACAATCAATCTTCTATAGA...

CDS

Download CDS FASTA

1509 bp · LXL04_007490|LXL04_007490|OH1004|CDS

ATGGGCGGCGGAGGAGGTGCTGGAGGTGTCCGTGGAATTCTGCTGGACAGCTCTGTAATCTTGGACTCCACCTCAAACGACAATGAAACTGCATCAATTCGCTCCGGAGCTGACTATTTACTTGGCAAGCTTCGACATTCCAACATTCCGACGGGAATATGTTATGAAGTAGGTCTCCCAGAACCAAAGGTGAAGCTTCTTGAGAAGCTGATTAGTGAATACTCATTTGAGGGATTCATCTACAATCAATCTTCTATAGA...

Protein

Download Protein FASTA

502 aa · LXL04_007490|LXL04_007490|OH1004|PROTEIN

MGGGGGAGGVRGILLDSSVILDSTSNDNETASIRSGADYLLGKLRHSNIPTGICYEVGLPEPKVKLLEKLISEYSFEGFIYNQSSIDDTVNDVSKAWGKNGGSILHVVLNNYEGLFSNVTNSGWMNVVVNVDGDGLSKNPNGICIEKLEELPMIISELNKKSNEDNVVVGYIMKPSREADFAKRGAFPLNPTKNGLIFLPLTFNLPILPQLKKVDIVIHKATDEISSIERSNSFNSSSKIIYTTGMLELQRCIGELPDCC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007490`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007490

Location Chr02:50445611-50448902 (+)

Description Similar to ITPK4: Inositol 1,3,4-trisphosphate 5/6-kinase 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g43980`	Kinase that can phosphorylate the inositol polyphosphate Ins(1,3,4)P3 to form InsP4.	Arabidopsis thaliana inositol 1,3,4-trisphosphate 5/6-kinase 4 (AtITPK4) is an outlier to a family of ATP-grasp fold proteins from Arabidopsis.2007 · DOI: 10.1016/j.febslet.2007.07.046

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0518700`	Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds.	No verified direct reference in this release
`UniProt: B8BDK0`	Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007490 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010264 myo-inositol hexakisphosphate biosynthetic process Biological Process

GO:0032957 inositol trisphosphate metabolic process Biological Process

GO:0070266 necroptotic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016324 apical plasma membrane Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0000825 inositol-1,3,4,5-tetrakisphosphate 6-kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0016853 isomerase activity Molecular Function

GO:0047325 inositol-3,4,5,6-tetrakisphosphate 1-kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G43980

dosa:Os09g0518700

dre:406290

mmu:217837

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.573

Rank 1 · LXL04_007490 · OH-1004

Nucleus0.412

Rank 2 · LXL04_007490 · OH-1004

Cell membrane0.082

Rank 3 · LXL04_007490 · OH-1004

Endoplasmic reticulum0.061

Rank 4 · LXL04_007490 · OH-1004

Lysosome / Vacuole0.049

Rank 5 · LXL04_007490 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28688.1HAD_ITPK4_N8-161 aa

PF05770.17Ins134_P3_kin294-481 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007490	`PF28688.1`	HAD_ITPK4_N	8	161	1.1e-55	188.6
LXL04_007490	`PF05770.17`	Ins134_P3_kin	294	481	7.9e-27	94.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80568`	Arabidopsis thaliana	Inositol 1,3,4-trisphosphate 5/6-kinase 4	51.515%	Swiss-Prot	strong database homology
`Q0J0B2`	Oryza sativa subsp. japonica	Inositol-tetrakisphosphate 1-kinase 6	48.394%	Swiss-Prot	moderate database homology
`B8BDK0`	Oryza sativa subsp. indica	Inositol-tetrakisphosphate 1-kinase 6	47.887%	Swiss-Prot	moderate database homology

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