LXL04_007486 | RubberDandelionOmics

Gene overview

LXL04_007486

Reference: OH-1004 Chr: Chr02 Coordinates: 50283925-50287115 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1080 bp · LXL04_007486|LXL04_007486|OH1004|cDNA

ATGAATTCATCATCCACTCAGTATCTCAACTCAAAGAGGATGGATGTATATGAGCCGATGCACCAATTTAGCATGTGGGGAGATTTCAAAGGCAACATCTATCAAGACACATCTGCCACCATGATTATAGAGATGGATACAAAGCTAGACAACCAGTCAGAGGATGCTTCACACACAACAATCGGACCTTCACATCACTTCGATCAAGAAGCAAGTAAACCAGGTGATAAGGTTCTAAGAAGACTTGCACAAAATCGCGA...

CDS

Download CDS FASTA

1080 bp · LXL04_007486|LXL04_007486|OH1004|CDS

ATGAATTCATCATCCACTCAGTATCTCAACTCAAAGAGGATGGATGTATATGAGCCGATGCACCAATTTAGCATGTGGGGAGATTTCAAAGGCAACATCTATCAAGACACATCTGCCACCATGATTATAGAGATGGATACAAAGCTAGACAACCAGTCAGAGGATGCTTCACACACAACAATCGGACCTTCACATCACTTCGATCAAGAAGCAAGTAAACCAGGTGATAAGGTTCTAAGAAGACTTGCACAAAATCGCGA...

Protein

Download Protein FASTA

359 aa · LXL04_007486|LXL04_007486|OH1004|PROTEIN

MNSSSTQYLNSKRMDVYEPMHQFSMWGDFKGNIYQDTSATMIIEMDTKLDNQSEDASHTTIGPSHHFDQEASKPGDKVLRRLAQNREAARKSRLRKKAYVQQLEASRSKLLHLEQELEQTRAQAALLSGGVNASHPGLPRAASSGIAAFEMEYEQWVEEQNKKTNALKTALNAPLPDTEIDILVKDTLNHYANLFNIKATAAKIDVCYLISGMWKTSTERLFLWIGGFRPSELLKVLVPQLELLDQQSHDLGNLIQACQQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007486`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007486

Location Chr02:50283925-50287115 (+)

Description Similar to TGA1A: TGACG-sequence-specific DNA-binding protein TGA-1A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g10030`	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'.	No verified direct reference in this release
`At5g65210`	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'.	No verified direct reference in this release
`At1g77920`	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0637000`	Transcriptional regulator involved in defense response.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007486 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G77920

ath:AT5G10030

ath:AT5G65210

dosa:Os04g0637000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.668

Rank 1 · LXL04_007486 · OH-1004

Cytoplasm0.357

Rank 2 · LXL04_007486 · OH-1004

Cell membrane0.056

Rank 3 · LXL04_007486 · OH-1004

Mitochondrion0.039

Rank 4 · LXL04_007486 · OH-1004

Endoplasmic reticulum0.037

Rank 5 · LXL04_007486 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00170.27bZIP_176-112 aa

PF14144.12DOG1165-238 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007486	`PF00170.27`	bZIP_1	76	112	3.2e-09	37.5
LXL04_007486	`PF14144.12`	DOG1	165	238	1.3e-25	90.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q39162`	Arabidopsis thaliana	Transcription factor TGA4	57.808%	Swiss-Prot	strong database homology
`Q39237`	Arabidopsis thaliana	Transcription factor TGA1	56.640%	Swiss-Prot	strong database homology
`Q93ZE2`	Arabidopsis thaliana	Transcription factor TGA7	49.468%	Swiss-Prot	moderate database homology
`A0A0P0WFC8`	Oryza sativa subsp. japonica	Transcription factor TGAL6	49.862%	Swiss-Prot	moderate database homology

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