LXL04_007474 | RubberDandelionOmics

Gene overview

LXL04_007474

Reference: OH-1004 Chr: Chr02 Coordinates: 49513701-49516496 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2724 bp · LXL04_007474|LXL04_007474|OH1004|cDNA

ATGGAGTGTAACAAAGATGAGGCATTTAGGGCCAAAGAGATTGCagaaaagaagatgatgaacaATGATTTTCAAGGGGCACGTAACATTGCACTAAAGGCCAAAAACTTATACCCTGAATTAGATAACATCTCCCAACTAATCACAGTCTGTGATGTTCACTGTTCATCTCTTAAAAAGATAAACGGTGTTGAAAAAGACCTTTATGCAATCCTCCAAATTGAAACCCTAGCTGATGAAGCAACCATCCGGAAGCAATA...

CDS

Download CDS FASTA

2724 bp · LXL04_007474|LXL04_007474|OH1004|CDS

ATGGAGTGTAACAAAGATGAGGCATTTAGGGCCAAAGAGATTGCAGAAAAGAAGATGATGAACAATGATTTTCAAGGGGCACGTAACATTGCACTAAAGGCCAAAAACTTATACCCTGAATTAGATAACATCTCCCAACTAATCACAGTCTGTGATGTTCACTGTTCATCTCTTAAAAAGATAAACGGTGTTGAAAAAGACCTTTATGCAATCCTCCAAATTGAAACCCTAGCTGATGAAGCAACCATCCGGAAGCAATA...

Protein

Download Protein FASTA

907 aa · LXL04_007474|LXL04_007474|OH1004|PROTEIN

MECNKDEAFRAKEIAEKKMMNNDFQGARNIALKAKNLYPELDNISQLITVCDVHCSSLKKINGVEKDLYAILQIETLADEATIRKQYRKLALALHPDKNKFPGAEAAFKLIGEAHMTLSDKGKRSLYDTKCKQPVKITVTKAQNHQKKGPYDRKQFASQSNGVNHHHHHQQPPPPDSSLPPSFWTFCPFCSIKYEYYREFVNRPLRCQHCQKLFIAHDLAAQGPMPGSRQSQPQPPPPPQPKPSVSHMDEVRRREKVKAK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007474`
TK1151 ID	TkA03G180420
OH-1004 ID	LXL04_007474
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	90.000
Protein coverage (%)	TK1151 100.000 / OH-1004 17.641 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007474

Location Chr02:49513701-49516496 (+)

Description Similar to ATJ49: Chaperone protein dnaJ 49

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g49060`	Plays a continuous role in plant development probably in the structural organization of compartments.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007474 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006457 protein folding Biological Process

GO:0006986 response to unfolded protein Biological Process

GO:0036503 ERAD pathway Biological Process

GO:0065003 protein-containing complex assembly Biological Process

GO:0071218 cellular response to misfolded protein Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005829 cytosol Cellular Component

GO:0031965 nuclear membrane Cellular Component

GO:0030544 Hsp70 protein binding Molecular Function

KEGG gene cross-reference

ath:AT5G49060

mmu:56709

xla:380336

xtr:549342

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.958

Rank 1 · LXL04_007474 · OH-1004

Cytoplasm0.096

Rank 2 · LXL04_007474 · OH-1004

Cell membrane0.028

Rank 3 · LXL04_007474 · OH-1004

Endoplasmic reticulum0.015

Rank 4 · LXL04_007474 · OH-1004

Mitochondrion0.011

Rank 5 · LXL04_007474 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00226.37DnaJ67-128 aa

PF23551.1Zn_ribbon_20183-216 aa

PF11926.14DUF3444418-624 aa

PF11926.14DUF3444708-879 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007474	`PF00226.37`	DnaJ	67	128	6e-21	75.0
LXL04_007474	`PF23551.1`	Zn_ribbon_20	183	216	3.5e-06	27.7
LXL04_007474	`PF11926.14`	DUF3444	418	624	1.2e-103	345.9
LXL04_007474	`PF11926.14`	DUF3444	708	879	1.2e-103	345.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FH28`	Arabidopsis thaliana	Chaperone protein dnaJ 49	34.161%	Swiss-Prot	weak database homology

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