LXL04_007436 | RubberDandelionOmics

Gene overview

LXL04_007436

Reference: OH-1004 Chr: Chr02 Coordinates: 48513715-48516276 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1329 bp · LXL04_007436|LXL04_007436|OH1004|cDNA

ATGGCACCAGCAACCCTTTTTAAAAACTACCGGATCTTTGTTGCAACATGGAATGTTGCAGGAAAATGTCCAGATTCCGGAGTTGATCTTGAAAATTTCTTGCAGGTTGAAGTCCCTTCAGACATATACGTGTTAGGGTTTCAAGAAGTTGTACCCTTAAACGCCGGAAATGTGTTGGTGAGTGAAAACCATGAACCGGCAGCAGTATGGCTATCACTAATCAGCCATGCTCTAAACAAACAACCATACACCGAGTCAAA...

CDS

Download CDS FASTA

1329 bp · LXL04_007436|LXL04_007436|OH1004|CDS

ATGGCACCAGCAACCCTTTTTAAAAACTACCGGATCTTTGTTGCAACATGGAATGTTGCAGGAAAATGTCCAGATTCCGGAGTTGATCTTGAAAATTTCTTGCAGGTTGAAGTCCCTTCAGACATATACGTGTTAGGGTTTCAAGAAGTTGTACCCTTAAACGCCGGAAATGTGTTGGTGAGTGAAAACCATGAACCGGCAGCAGTATGGCTATCACTAATCAGCCATGCTCTAAACAAACAACCATACACCGAGTCAAA...

Protein

Download Protein FASTA

442 aa · LXL04_007436|LXL04_007436|OH1004|PROTEIN

MAPATLFKNYRIFVATWNVAGKCPDSGVDLENFLQVEVPSDIYVLGFQEVVPLNAGNVLVSENHEPAAVWLSLISHALNKQPYTESNPNPVDSNHSSSPDPKARWFHRHSMKNGNPSKHISTVDDVLLKACNCEIVASLSSKKRMNRHSDPSFSFTQAVIDDLISHADVTPLPYCLVASKQMVGLFLSVWVRRELVQHIGHLGITCVGRGIMGYLGNKGCVAISLTLHRTSFCFVCTHLAAGEKEGDEVKRNLDVWEILK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007436`
TK1151 ID	TkA03G175150
OH-1004 ID	LXL04_007436
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_007436

Location Chr02:48513715-48516276 (-)

Description Similar to IP5P5: Type I inositol polyphosphate 5-phosphatase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65090`	May be involved in the regulation of root hairs development.	Genetic interactions during root hair morphogenesis in Arabidopsis.2000 · DOI: 10.1105/tpc.12.10.1961 Analysis of the root-hair morphogenesis transcriptome reveals the molecular identity of six genes with roles in root-hair development in Arabidopsis.2006 · DOI: 10.1111/j.1365-313x.2005.02609.x
`At5g04980`	Type I inositol polyphosphate 5-phosphatase 10.	No verified direct reference in this release
`At3g63240`	Type I inositol polyphosphate 5-phosphatase 4.	No verified direct reference in this release
`At2g37440`	Type I inositol polyphosphate 5-phosphatase 8.	No verified direct reference in this release
`At2g32010`	Has phosphatase activity toward PtdIns(4,5)P₂ and, more weakly, PtdIns(3,4,5)P₃, but not Ins(1,4,5)P₃.	CVP2- and CVL1-mediated phosphoinositide signaling as a regulator of the ARF GAP SFC/VAN3 in establishment of foliar vein patterns.2009 · DOI: 10.1111/j.1365-313x.2009.03920.x Primary root protophloem differentiation requires balanced phosphatidylinositol-4,5-biphosphate levels and systemically affects root branching.2015 · DOI: 10.1242/dev.118364

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007436 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009932 cell tip growth Biological Process

GO:0010053 root epidermal cell differentiation Biological Process

GO:0010305 leaf vascular tissue pattern formation Biological Process

GO:0046856 phosphatidylinositol dephosphorylation Biological Process

GO:0048765 root hair cell differentiation Biological Process

GO:0048766 root hair initiation Biological Process

GO:0071472 cellular response to salt stress Biological Process

GO:2000377 regulation of reactive oxygen species metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT2G32010

ath:AT2G37440

ath:AT3G63240

ath:AT5G04980

ath:AT5G65090

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.406

Rank 1 · LXL04_007436 · OH-1004

Nucleus0.279

Rank 2 · LXL04_007436 · OH-1004

Cell membrane0.196

Rank 3 · LXL04_007436 · OH-1004

Golgi apparatus0.093

Rank 4 · LXL04_007436 · OH-1004

Plastid0.092

Rank 5 · LXL04_007436 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22669.3Exo_endo_phos216-82 aa

PF22669.3Exo_endo_phos2137-400 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007436	`PF22669.3`	Exo_endo_phos2	16	82	9.3e-74	249.2
LXL04_007436	`PF22669.3`	Exo_endo_phos2	137	400	9.3e-74	249.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q66GQ6`	Arabidopsis thaliana	Type I inositol polyphosphate 5-phosphatase 5	53.277%	Swiss-Prot	strong database homology
`A8MR21`	Arabidopsis thaliana	Type I inositol polyphosphate 5-phosphatase 10	51.142%	Swiss-Prot	strong database homology
`Q8GTS0`	Arabidopsis thaliana	Type I inositol polyphosphate 5-phosphatase 4	45.852%	Swiss-Prot	moderate database homology
`Q0WT19`	Arabidopsis thaliana	Type I inositol polyphosphate 5-phosphatase 8	49.380%	Swiss-Prot	moderate database homology
`Q0WQ41`	Arabidopsis thaliana	Type IV inositol polyphosphate 5-phosphatase 7	60.924%	Swiss-Prot	moderate database homology

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