LXL04_007387 | RubberDandelionOmics

Gene overview

LXL04_007387

Reference: OH-1004 Chr: Chr02 Coordinates: 46387202-46388874 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1569 bp · LXL04_007387|LXL04_007387|OH1004|cDNA

ATGGAGAAGCTCCCGAACGAAGGGTGGACGAAGGTCCGACGAGGACGCTACCAAAGCAAACAAGCAAGAGAAGCAGTAACCACATACTTCGTCAGCAATGCATCAAAGGAGACGACGAAAGGAGAGATGAAGAAAGTATTCGCAAAGTTCGGAAAACTGATAGATGTATACATGGGCACAAAGGTGGGAAGAAACGGACAACACTATGCATTCATCAGATTCGTTGTTGTTGAAGATGCAGGTGAACTAGAAAGGAGAAT...

CDS

Download CDS FASTA

1569 bp · LXL04_007387|LXL04_007387|OH1004|CDS

ATGGAGAAGCTCCCGAACGAAGGGTGGACGAAGGTCCGACGAGGACGCTACCAAAGCAAACAAGCAAGAGAAGCAGTAACCACATACTTCGTCAGCAATGCATCAAAGGAGACGACGAAAGGAGAGATGAAGAAAGTATTCGCAAAGTTCGGAAAACTGATAGATGTATACATGGGCACAAAGGTGGGAAGAAACGGACAACACTATGCATTCATCAGATTCGTTGTTGTTGAAGATGCAGGTGAACTAGAAAGGAGAAT...

Protein

Download Protein FASTA

522 aa · LXL04_007387|LXL04_007387|OH1004|PROTEIN

MEKLPNEGWTKVRRGRYQSKQAREAVTTYFVSNASKETTKGEMKKVFAKFGKLIDVYMGTKVGRNGQHYAFIRFVVVEDAGELERRMNGTNIRGRKLEVNIAKHERKAPPPPLLNTTRNPKPVLFPNSNQSRQGNSSLRDHRTFAEMEEETWHWLWKTSLIGKAKSLEHLGHMPKLLKSGKKIQMSIKYIGGLNVLIEFGCSMEAKEFLANGDRWKEYLRWLQWGEHTNHWHGRIAWIRIVGLPMNLWGERNFDAITKAF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007387`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007387

Location Chr02:46387202-46388874 (-)

Description Similar to SRSF2: Serine/arginine-rich splicing factor 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0730800`	Involved in C-to-U editing of chloroplastic RNA.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_007387 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0006397 mRNA processing Biological Process

GO:0008380 RNA splicing Biological Process

GO:0016554 cytidine to uridine editing Biological Process

GO:0080156 mitochondrial mRNA modification Biological Process

GO:1900871 chloroplast mRNA modification Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005681 spliceosomal complex Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

cel:CELE_EEED8.7

dosa:Os02g0730800

gga:396195

hsa:10929

osa:4330618

ptr:619467

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.539

Rank 1 · LXL04_007387 · OH-1004

Nucleus0.363

Rank 2 · LXL04_007387 · OH-1004

Cell membrane0.177

Rank 3 · LXL04_007387 · OH-1004

Endoplasmic reticulum0.037

Rank 4 · LXL04_007387 · OH-1004

Mitochondrion0.037

Rank 5 · LXL04_007387 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00076.29RRM_130-97 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007387	`PF00076.29`	RRM_1	30	97	2.6e-09	37.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6YWP9`	Oryza sativa subsp. japonica	Organelle RRM domain-containing protein 1, chloroplastic	29.126%	Swiss-Prot	weak database homology

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