LXL04_007385 | RubberDandelionOmics

Gene overview

LXL04_007385

Reference: OH-1004 Chr: Chr02 Coordinates: 46327118-46331198 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1584 bp · LXL04_007385|LXL04_007385|OH1004|cDNA

ATGAAAGGTAATTGTTCTTCGATTTTGAAATTTATAGGTAATTTTCTTGCCATTTTTTCATACGATTTCTGTTGTGCTGTAGTTTCTCGGAAAATGTCGAAGAATTTCCTGAACAGAGCAAGCTCGAAGAAACCTCAGAAAAACCTAGAAAATAAATCGGATGAAAGTTCGAAAAACAAGCCGGATCGTGGTAGTGAAAGCGACGATCAATCGTCTCCAAGAGGCGTGTTTGAAGTTCCAGGTTCCGGTTCAGATTCCGA...

CDS

Download CDS FASTA

1584 bp · LXL04_007385|LXL04_007385|OH1004|CDS

ATGAAAGGTAATTGTTCTTCGATTTTGAAATTTATAGGTAATTTTCTTGCCATTTTTTCATACGATTTCTGTTGTGCTGTAGTTTCTCGGAAAATGTCGAAGAATTTCCTGAACAGAGCAAGCTCGAAGAAACCTCAGAAAAACCTAGAAAATAAATCGGATGAAAGTTCGAAAAACAAGCCGGATCGTGGTAGTGAAAGCGACGATCAATCGTCTCCAAGAGGCGTGTTTGAAGTTCCAGGTTCCGGTTCAGATTCCGA...

Protein

Download Protein FASTA

527 aa · LXL04_007385|LXL04_007385|OH1004|PROTEIN

MKGNCSSILKFIGNFLAIFSYDFCCAVVSRKMSKNFLNRASSKKPQKNLENKSDESSKNKPDRGSESDDQSSPRGVFEVPGSGSDSDNSINLRRCMSASASSYSLKFCEKPQAVTTGGCDGDGDRENNSTSIPASPTAESVPWRNMVDNLKWKSFRRFSTGPLVAGYELSRKSFMKKLGRNNSSEAINNEFFMPKPSWRSFTYEELESATNGFSPENLLGKGGHAEVYKGYLPDGQIVAVKKITKKEKKDQDRVGDFLAE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007385`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_007385

Location Chr02:46327118-46331198 (-)

Description Similar to RBK1: Receptor-like cytosolic serine/threonine-protein kinase RBK1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g10520`	Receptor-like cytosolic serine/threonine-protein kinase RBK1.	No verified direct reference in this release
`At3g05140`	Receptor-like cytosolic serine/threonine-protein kinase RBK2.	No verified direct reference in this release
`At5g57670`	Probable receptor-like serine/threonine-protein kinase At5g57670.	No verified direct reference in this release
`At3g24550`	Proline-rich receptor-like protein kinase PERK1.	No verified direct reference in this release
`At2g16750`	Promotes cell proliferation in the gibberellic acid (GA) signaling pathway, acting downstream of RGA, and possibly through a negative regulation of two cyclin-dependent kinase inhibitors SIM and SMR1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007385 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0009620 response to fungus Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0010476 gibberellin mediated signaling pathway Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0051781 positive regulation of cell division Biological Process

GO:0071369 cellular response to ethylene stimulus Biological Process

GO:0098542 defense response to other organism Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT2G16750

ath:AT3G05140

ath:AT3G24550

ath:AT5G10520

ath:AT5G57670

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.695

Rank 1 · LXL04_007385 · OH-1004

Nucleus0.239

Rank 2 · LXL04_007385 · OH-1004

Cytoplasm0.221

Rank 3 · LXL04_007385 · OH-1004

Endoplasmic reticulum0.039

Rank 4 · LXL04_007385 · OH-1004

Golgi apparatus0.025

Rank 5 · LXL04_007385 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase216-478 aa

PF07714.24PK_Tyr_Ser-Thr217-480 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007385	`PF00069.32`	Pkinase	216	478	1.1e-42	147.0
LXL04_007385	`PF07714.24`	PK_Tyr_Ser-Thr	217	480	3e-44	152.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8H1D6`	Arabidopsis thaliana	Receptor-like cytosolic serine/threonine-protein kinase RBK1	57.828%	Swiss-Prot	strong database homology
`Q8RXC8`	Arabidopsis thaliana	Receptor-like cytosolic serine/threonine-protein kinase RBK2	43.162%	Swiss-Prot	moderate database homology
`Q5XF57`	Arabidopsis thaliana	Probable receptor-like serine/threonine-protein kinase At5g57670	50.694%	Swiss-Prot	moderate database homology
`Q9LV48`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK1	40.643%	Swiss-Prot	moderate database homology
`B5X4Z9`	Arabidopsis thaliana	Protein kinase STUNTED	43.686%	Swiss-Prot	moderate database homology

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