LXL04_007326 | RubberDandelionOmics

Gene overview

LXL04_007326

Reference: OH-1004 Chr: Chr02 Coordinates: 44351781-44354530 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1626 bp · LXL04_007326|LXL04_007326|OH1004|cDNA

ATGCAAACTTTTTAcgtcttcttcttcatcatttTCCTGTCAATTCCGGCCAAGAATTTCATTCAACACTCTAATGCCTGCGTCTTCACGTTAAAGATGCATCACCGCTTCTCGGAGCCGGTTAAGAGGTGGTCGGAAGGTTTTAACAAGCTTACGCCCGGTGATTTCCCGGAAAAGGGTAGCGTCGAGTACTACTCGCAGTTGGTCGACCACGACAAGATATTCAGAGGCCGGAGGCTTTCGGATTCCGGCGAAGAACG...

CDS

Download CDS FASTA

1626 bp · LXL04_007326|LXL04_007326|OH1004|CDS

ATGCAAACTTTTTACGTCTTCTTCTTCATCATTTTCCTGTCAATTCCGGCCAAGAATTTCATTCAACACTCTAATGCCTGCGTCTTCACGTTAAAGATGCATCACCGCTTCTCGGAGCCGGTTAAGAGGTGGTCGGAAGGTTTTAACAAGCTTACGCCCGGTGATTTCCCGGAAAAGGGTAGCGTCGAGTACTACTCGCAGTTGGTCGACCACGACAAGATATTCAGAGGCCGGAGGCTTTCGGATTCCGGCGAAGAACG...

Protein

Download Protein FASTA

541 aa · LXL04_007326|LXL04_007326|OH1004|PROTEIN

MQTFYVFFFIIFLSIPAKNFIQHSNACVFTLKMHHRFSEPVKRWSEGFNKLTPGDFPEKGSVEYYSQLVDHDKIFRGRRLSDSGEERLTFSDGNSSFRISSLGFLHYTTVSLGTPGQKFMVALDTGSDLFWVPCDCTRCASIDNTAYSSEFKLSIYSPTRSSTSKKLTCNHSMCTHRHDCPGSEAFNTCPYSVSYVSSQTSTSGILMEDLLHLETEDSEGEIIDAFVTFGCGQVQSGSFLDIAAPNGLFGLGLEKISVPS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007326`
TK1151 ID	TkA03G157130
OH-1004 ID	LXL04_007326
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.200
Protein coverage (%)	TK1151 98.742 / OH-1004 92.421 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007326

Location Chr02:44351781-44354530 (-)

Description Similar to APF1: Aspartyl protease family protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g17760`	Aspartyl protease.	No verified direct reference in this release
`At5g10080`	Aspartic proteinase-like protein 1.	No verified direct reference in this release
`At1g65240`	Displays aspartic proteolytic activity.	No verified direct reference in this release
`At1g49050`	Involved in proteolytic processing of BAG6 and plant basal immunity.	Aspartyl Protease-Mediated Cleavage of BAG6 Is Necessary for Autophagy and Fungal Resistance in Plants.2016 · DOI: 10.1105/tpc.15.00626
`At5g36260`	Displays aspartic proteolytic activity.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007326 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009555 pollen development Biological Process

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G49050

ath:AT1G65240

ath:AT2G17760

ath:AT5G10080

ath:AT5G36260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.531

Rank 1 · LXL04_007326 · OH-1004

Extracellular0.150

Rank 2 · LXL04_007326 · OH-1004

Cytoplasm0.112

Rank 3 · LXL04_007326 · OH-1004

Endoplasmic reticulum0.111

Rank 4 · LXL04_007326 · OH-1004

Lysosome / Vacuole0.101

Rank 5 · LXL04_007326 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14543.12TAXi_N107-288 aa

PF00026.29Asp107-442 aa

PF14541.12TAXi_C308-448 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007326	`PF14543.12`	TAXi_N	107	288	3.6e-36	125.7
LXL04_007326	`PF00026.29`	Asp	107	442	1.9e-26	93.9
LXL04_007326	`PF14541.12`	TAXi_C	308	448	2.9e-17	63.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VYV9`	Arabidopsis thaliana	Aspartyl protease family protein 1	53.682%	Swiss-Prot	strong database homology
`Q9LX20`	Arabidopsis thaliana	Aspartic proteinase-like protein 1	37.712%	Swiss-Prot	moderate database homology
`Q9S9K4`	Arabidopsis thaliana	Aspartic proteinase 39	28.424%	Swiss-Prot	weak database homology
`Q9M9A8`	Arabidopsis thaliana	Aspartyl protease APCB1	26.702%	Swiss-Prot	weak database homology
`Q4V3D2`	Arabidopsis thaliana	Aspartic proteinase 36	26.291%	Swiss-Prot	weak database homology

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