LXL04_007254 | RubberDandelionOmics

Gene overview

LXL04_007254

Reference: OH-1004 Chr: Chr02 Coordinates: 41370465-41371955 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1491 bp · LXL04_007254|LXL04_007254|OH1004|cDNA

ATGGCTTTCTTTGAATCTTTGGCCGTTTTCATTTTCACGTCCTTCTTAGTTTTTTATTACAAATCTCAAAACGTAAAAACTCGTATTGAAAGGAAGTGGTTGCCTCTTGGTATGATATGGGAGGTCCTCACAAACATGCACCGTATCCATGATTTGTTTGCCGTTTATTTGAATGCTAGTGGCGGCACTTTCATGTTGAGAGGTCCTTGGTTTGCCAAAATGGATATGCTTATTACCACAGACCCATTAGACGTCCATCA...

CDS

Download CDS FASTA

1491 bp · LXL04_007254|LXL04_007254|OH1004|CDS

ATGGCTTTCTTTGAATCTTTGGCCGTTTTCATTTTCACGTCCTTCTTAGTTTTTTATTACAAATCTCAAAACGTAAAAACTCGTATTGAAAGGAAGTGGTTGCCTCTTGGTATGATATGGGAGGTCCTCACAAACATGCACCGTATCCATGATTTGTTTGCCGTTTATTTGAATGCTAGTGGCGGCACTTTCATGTTGAGAGGTCCTTGGTTTGCCAAAATGGATATGCTTATTACCACAGACCCATTAGACGTCCATCA...

Protein

Download Protein FASTA

496 aa · LXL04_007254|LXL04_007254|OH1004|PROTEIN

MAFFESLAVFIFTSFLVFYYKSQNVKTRIERKWLPLGMIWEVLTNMHRIHDLFAVYLNASGGTFMLRGPWFAKMDMLITTDPLDVHHVLSKNFSNYPKGQKFRKIFDIFGDGIFNVDGHLWEIQRKSTMSLFNQPNFQSVFETIVWDKVEKGLLPVLESISKRDMEIDLQDIFQRFTFDTICKLLVDDDLKSLSLDFSCVPCEKSISDIAEGLFYRHFVPPLFWKLQQLLRMGNEMKLSEAYDDVDHLVNKYLNIIQNES...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007254`
TK1151 ID	TkA03G148980
OH-1004 ID	LXL04_007254
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007254

Location Chr02:41370465-41371955 (+)

Description Similar to CYP96A15: Alkane hydroxylase MAH1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g57750`	Involved in the formation of secondary alcohols and ketones in stem cuticular wax.	The cytochrome P450 enzyme CYP96A15 is the midchain alkane hydroxylase responsible for formation of secondary alcohols and ketones in stem cuticular wax of Arabidopsis.2007 · DOI: 10.1104/pp.107.107300

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007254 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006629 lipid metabolic process Biological Process

GO:0009820 alkaloid metabolic process Biological Process

GO:0010025 wax biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function

GO:0020037 heme binding Molecular Function

GO:0080133 midchain alkane hydroxylase activity Molecular Function

KEGG gene cross-reference

ag:AMO65741

ath:AT1G57750

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.919

Rank 1 · LXL04_007254 · OH-1004

Cytoplasm0.040

Rank 2 · LXL04_007254 · OH-1004

Nucleus0.030

Rank 3 · LXL04_007254 · OH-1004

Cell membrane0.029

Rank 4 · LXL04_007254 · OH-1004

Plastid0.023

Rank 5 · LXL04_007254 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45048-477 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007254	`PF00067.28`	p450	48	477	1.6e-56	192.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FVS9`	Arabidopsis thaliana	Alkane hydroxylase MAH1	41.717%	Swiss-Prot	moderate database homology

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