LXL04_007206 | RubberDandelionOmics

Gene overview

LXL04_007206

Reference: OH-1004 Chr: Chr02 Coordinates: 39556544-39560560 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2448 bp · LXL04_007206|LXL04_007206|OH1004|cDNA

ATGGGAAATCTCAAGGATTTTCATCAAGTTTTCTGCATTGGGACGGCCGATACCAAGCTTGAAGAACTGCTATTTCTCTCCGAGTCTGTCCGATCCAATCTCACAAACTTTTCCCCTACTTCTTCCTCCAAGGTAAAAGTTGTAGTTATAGATGTGTCAGTTGGATCAAAAGAGATTAACAGCTTCAAAGATTTTGAGTTCGTATCCCGAAAGGAACTTCTCTCTACCTACTCCGAATCTCTAAATCAACCAGAAACACA...

CDS

Download CDS FASTA

2448 bp · LXL04_007206|LXL04_007206|OH1004|CDS

ATGGGAAATCTCAAGGATTTTCATCAAGTTTTCTGCATTGGGACGGCCGATACCAAGCTTGAAGAACTGCTATTTCTCTCCGAGTCTGTCCGATCCAATCTCACAAACTTTTCCCCTACTTCTTCCTCCAAGGTAAAAGTTGTAGTTATAGATGTGTCAGTTGGATCAAAAGAGATTAACAGCTTCAAAGATTTTGAGTTCGTATCCCGAAAGGAACTTCTCTCTACCTACTCCGAATCTCTAAATCAACCAGAAACACA...

Protein

Download Protein FASTA

815 aa · LXL04_007206|LXL04_007206|OH1004|PROTEIN

MGNLKDFHQVFCIGTADTKLEELLFLSESVRSNLTNFSPTSSSKVKVVVIDVSVGSKEINSFKDFEFVSRKELLSTYSESLNQPETQIPESRSEALAIMNKALTLHLKNAHHRGSLAGVVGLGGSGGTSLMSSAFRSLPLGLPKIIVSTIASGQTEGYIGTSDLILFPSVVDICGINNVSRVILSNAGAAFSGMVSGKLLNLKDSYSGNDKFTLGLTMFGVTTPCVNAVKERLNKEGYETLVFHATGVGGRAMEDLVRGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007206`
TK1151 ID	TkA03G137480
OH-1004 ID	LXL04_007206
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_007206`
Location	Chr02:39556544-39560560 (+)
Description	Similar to tm-1: ToMV susceptible protein tm-1(GCR26)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_007206` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0044830 host-mediated perturbation of viral RNA genome replication Biological Process GO:0051607 defense response to virus Biological Process GO:0003824 catalytic activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0042803 protein homodimerization activity Molecular Function
KEGG gene cross-reference	rhi:NGR_a02140 sen:SACE_5696 sly:100134884 ype:YPO3839 ypk:y0391 ypm:YP_3209 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.577

Rank 1 · LXL04_007206 · OH-1004

Nucleus0.228

Rank 2 · LXL04_007206 · OH-1004

Plastid0.119

Rank 3 · LXL04_007206 · OH-1004

Mitochondrion0.111

Rank 4 · LXL04_007206 · OH-1004

Peroxisome0.104

Rank 5 · LXL04_007206 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06792.18UPF02619-197 aa

PF23189.2UPF0261_C211-428 aa

PF09370.17PEP_hydrolase486-750 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007206	`PF06792.18`	UPF0261	9	197	2.9e-54	184.4
LXL04_007206	`PF23189.2`	UPF0261_C	211	428	2.2e-93	312.2
LXL04_007206	`PF09370.17`	PEP_hydrolase	486	750	1.1e-132	441.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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