LXL04_006931 | RubberDandelionOmics

Gene overview

LXL04_006931

Reference: OH-1004 Chr: Chr02 Coordinates: 30406026-30408886 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1512 bp · LXL04_006931|LXL04_006931|OH1004|cDNA

ATGAGACGGCGACCAGGAATCGGTGGTTTACAGACTGCCGCCGCTGCTAGGACGCGTGGTGATCGTCCCGATCATGAAGCTATCGATGCTGCTAAGGCGAGGCTTGCGGAGATTGACTCGATGTTTTCGAATGATCTCGATGAGATTAAATTGGAGGAGAAACAGAAGAAGGCGATCGAGAGGGAGAGGCAGATGCATAAAACTTTGATCTCGTTGGATCAGATGCATCAATCGTATGATAAAATGTTGTGCAAGGCAGA...

CDS

Download CDS FASTA

1512 bp · LXL04_006931|LXL04_006931|OH1004|CDS

ATGAGACGGCGACCAGGAATCGGTGGTTTACAGACTGCCGCCGCTGCTAGGACGCGTGGTGATCGTCCCGATCATGAAGCTATCGATGCTGCTAAGGCGAGGCTTGCGGAGATTGACTCGATGTTTTCGAATGATCTCGATGAGATTAAATTGGAGGAGAAACAGAAGAAGGCGATCGAGAGGGAGAGGCAGATGCATAAAACTTTGATCTCGTTGGATCAGATGCATCAATCGTATGATAAAATGTTGTGCAAGGCAGA...

Protein

Download Protein FASTA

503 aa · LXL04_006931|LXL04_006931|OH1004|PROTEIN

MRRRPGIGGLQTAAAARTRGDRPDHEAIDAAKARLAEIDSMFSNDLDEIKLEEKQKKAIERERQMHKTLISLDQMHQSYDKMLCKAEKRLEKLYESVNAGKQSLQDINRAYVLPMKMMKKSLDKHHDDSANEISSLENCNPSCYFSVVVGSTAAQKRKQNAVSVGKERREALFRTKRLCRAGVSTDTDIPIDDNDMMIEEEQSILESQTTSAVQELNLAITFQGKGAVQKKVNALRELRRLLSKSGAIPLLAQCLSFGSQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006931`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006931

Location Chr02:30406026-30408886 (+)

Description Similar to IMPA9: Importin subunit alpha-9

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03070`	Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope (By similarity).	No verified direct reference in this release
`At5g05850`	Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction.	PIRL1 and PIRL9, encoding members of a novel plant-specific family of leucine-rich repeat proteins, are essential for differentiation of microspores into pollen.2010 · DOI: 10.1007/s00425-010-1242-6 Effect of sporophytic PIRL9 genotype on post-meiotic expression of the Arabidopsis pirl1;pirl9 mutant pollen phenotype.2011 · DOI: 10.1007/s00425-010-1324-5
`At3g11330`	Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction.	PIRL1 and PIRL9, encoding members of a novel plant-specific family of leucine-rich repeat proteins, are essential for differentiation of microspores into pollen.2010 · DOI: 10.1007/s00425-010-1242-6 Effect of sporophytic PIRL9 genotype on post-meiotic expression of the Arabidopsis pirl1;pirl9 mutant pollen phenotype.2011 · DOI: 10.1007/s00425-010-1324-5

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0158000`	Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006931 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006606 protein import into nucleus Biological Process

GO:0006607 NLS-bearing protein import into nucleus Biological Process

GO:0006999 nuclear pore organization Biological Process

GO:0007127 meiosis I Biological Process

GO:0007276 gamete generation Biological Process

GO:0007292 female gamete generation Biological Process

GO:0009555 pollen development Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0055046 microgametogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005643 nuclear pore Cellular Component

KEGG gene cross-reference

ath:AT3G11330

ath:AT5G03070

ath:AT5G05850

cel:CELE_F32E10.4

dosa:Os01g0158000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.494

Rank 1 · LXL04_006931 · OH-1004

Cytoplasm0.413

Rank 2 · LXL04_006931 · OH-1004

Mitochondrion0.102

Rank 3 · LXL04_006931 · OH-1004

Cell membrane0.068

Rank 4 · LXL04_006931 · OH-1004

Endoplasmic reticulum0.061

Rank 5 · LXL04_006931 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00514.30Arm237-276 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006931	`PF00514.30`	Arm	237	276	3.1e-09	37.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4KF65`	Arabidopsis thaliana	Importin subunit alpha-9	55.263%	Swiss-Prot	moderate database homology
`Q9FFJ3`	Arabidopsis thaliana	Plant intracellular Ras-group-related LRR protein 1	42.708%	Swiss-Prot	weak database homology
`Q8VYG9`	Arabidopsis thaliana	Plant intracellular Ras-group-related LRR protein 9	38.235%	Swiss-Prot	weak database homology
`Q9FYP9`	Oryza sativa subsp. japonica	Importin subunit alpha-2	51.316%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card